RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 UPP2O95045 317 aa21.24■□□□□ 0.99
UPF1-209ENST00000600310 GCNT3O95395 438 aa21.24■□□□□ 0.99
UPF1-209ENST00000600310 EOMESO95936 686 aa21.24■□□□□ 0.99
UPF1-209ENST00000600310 ALCAMQ13740 583 aa21.24■□□□□ 0.99
UPF1-209ENST00000600310 TMEM132AQ24JP5 1023 aa21.24■□□□□ 0.99
UPF1-209ENST00000600310 ZC2HC1CQ53FD0 456 aaPredicted RBP21.24■□□□□ 0.99
UPF1-209ENST00000600310 FAM26FQ5R3K3 315 aa21.24■□□□□ 0.99
UPF1-209ENST00000600310 SLC27A1Q6PCB7 646 aa21.24■□□□□ 0.99
UPF1-209ENST00000600310 ZPBP2Q6X784 338 aa21.24■□□□□ 0.99
UPF1-209ENST00000600310 CDR2LQ86X02 465 aaPredicted RBP21.24■□□□□ 0.99
UPF1-209ENST00000600310 HPS3Q969F9 1004 aa21.24■□□□□ 0.99
UPF1-209ENST00000600310 EIF2AQ9BY44 585 aaKnown RBP21.24■□□□□ 0.99
UPF1-209ENST00000600310 LRFN2Q9ULH4 789 aa21.24■□□□□ 0.99
UPF1-209ENST00000600310 PCDHB13Q9Y5F0 798 aa21.24■□□□□ 0.99
UPF1-209ENST00000600310 TTC3P53804 2025 aa21.24■□□□□ 0.99
UPF1-209ENST00000600310 MYH11P35749 1972 aa21.23■□□□□ 0.99
UPF1-209ENST00000600310 PIGRP01833 764 aa21.23■□□□□ 0.99
UPF1-209ENST00000600310 ATF7P17544 494 aaPredicted RBP21.23■□□□□ 0.99
UPF1-209ENST00000600310 CASP5P51878 434 aa21.23■□□□□ 0.99
UPF1-209ENST00000600310 RABGGTBP53611 331 aa21.23■□□□□ 0.99
UPF1-209ENST00000600310 HTRA4P83105 476 aaPredicted RBP21.23■□□□□ 0.99
UPF1-209ENST00000600310 KMT5BQ4FZB7 885 aa21.23■□□□□ 0.99
UPF1-209ENST00000600310 EEF1DP3Q658K8 133 aa21.23■□□□□ 0.99
UPF1-209ENST00000600310 FAM117BQ6P1L5 589 aa21.23■□□□□ 0.99
UPF1-209ENST00000600310 MRPL10Q7Z7H8 261 aaKnown RBP21.23■□□□□ 0.99
UPF1-209ENST00000600310 MAP4K3Q8IVH8 894 aa21.23■□□□□ 0.99
UPF1-209ENST00000600310 RAD9AQ99638 391 aa21.23■□□□□ 0.99
UPF1-209ENST00000600310 ZBED2Q9BTP6 218 aa21.23■□□□□ 0.99
UPF1-209ENST00000600310 FGFBP2Q9BYJ0 223 aa21.23■□□□□ 0.99
UPF1-209ENST00000600310 PTPRHQ9HD43 1115 aa21.23■□□□□ 0.99
UPF1-209ENST00000600310 HOOK1Q9UJC3 728 aaKnown RBP21.23■□□□□ 0.99
UPF1-209ENST00000600310 PCDHA11Q9Y5I1 949 aa21.23■□□□□ 0.99
UPF1-209ENST00000600310 TLL1O43897 1013 aa21.22■□□□□ 0.99
UPF1-209ENST00000600310 DGKIO75912 1065 aa21.22■□□□□ 0.99
UPF1-209ENST00000600310 RPN1P04843 607 aaKnown RBP21.22■□□□□ 0.99
UPF1-209ENST00000600310 MYBP10242 640 aa21.22■□□□□ 0.99
UPF1-209ENST00000600310 IBSPP21815 317 aaPredicted RBP21.22■□□□□ 0.99
UPF1-209ENST00000600310 PROZP22891 400 aa21.22■□□□□ 0.99
UPF1-209ENST00000600310 RAB30Q15771 203 aa21.22■□□□□ 0.99
UPF1-209ENST00000600310 STXBP4Q6ZWJ1 553 aa21.22■□□□□ 0.99
UPF1-209ENST00000600310 CCDC47Q96A33 483 aaKnown RBP21.22■□□□□ 0.99
UPF1-209ENST00000600310 ADPGKQ9BRR6 497 aa21.22■□□□□ 0.99
UPF1-209ENST00000600310 PBX4Q9BYU1 374 aa21.22■□□□□ 0.99
UPF1-209ENST00000600310 EXOC1Q9NV70 894 aa21.22■□□□□ 0.99
UPF1-209ENST00000600310 INSL6Q9Y581 213 aa21.22■□□□□ 0.99
UPF1-209ENST00000600310 ABLIM1O14639 778 aa21.21■□□□□ 0.99
UPF1-209ENST00000600310 TOM1L1O75674 476 aa21.21■□□□□ 0.99
UPF1-209ENST00000600310 NPTXRO95502 500 aa21.21■□□□□ 0.99
UPF1-209ENST00000600310 PBX2P40425 430 aa21.21■□□□□ 0.99
UPF1-209ENST00000600310 PSMD2Q13200 908 aa21.21■□□□□ 0.99
UPF1-209ENST00000600310 PNOCQ13519 176 aa21.21■□□□□ 0.99
UPF1-209ENST00000600310 KCNB1Q14721 858 aa21.21■□□□□ 0.99
UPF1-209ENST00000600310 DCAF4L1Q3SXM0 396 aa21.21■□□□□ 0.99
UPF1-209ENST00000600310 L1TD1Q5T7N2 865 aaKnown RBP21.21■□□□□ 0.99
UPF1-209ENST00000600310 APBB1IPQ7Z5R6 666 aaPredicted RBP21.21■□□□□ 0.99
UPF1-209ENST00000600310 SMG8Q8ND04 991 aaKnown RBP21.21■□□□□ 0.99
UPF1-209ENST00000600310 GLIS3Q8NEA6 775 aa21.21■□□□□ 0.99
UPF1-209ENST00000600310 ZNF689Q96CS4 500 aaPredicted RBP21.21■□□□□ 0.99
UPF1-209ENST00000600310 PGBD4Q96DM1 585 aa21.21■□□□□ 0.99
UPF1-209ENST00000600310 BICD1Q96G01 975 aa21.21■□□□□ 0.99
UPF1-209ENST00000600310 YME1L1Q96TA2 773 aa21.21■□□□□ 0.99
UPF1-209ENST00000600310 TRIM6Q9C030 488 aaPredicted RBP21.21■□□□□ 0.99
UPF1-209ENST00000600310 RNF19AQ9NV58 838 aa21.21■□□□□ 0.99
UPF1-209ENST00000600310 EXOC7Q9UPT5 735 aa21.21■□□□□ 0.99
UPF1-209ENST00000600310 IPPQ9Y573 584 aa21.21■□□□□ 0.99
UPF1-209ENST00000600310 EIF3DO15371 548 aaKnown RBP eCLIP21.2■□□□□ 0.98
UPF1-209ENST00000600310 HOXA2O43364 376 aa21.2■□□□□ 0.98
UPF1-209ENST00000600310 PRPF6O94906 941 aaKnown RBP21.2■□□□□ 0.98
UPF1-209ENST00000600310 RHOBTB3O94955 611 aa21.2■□□□□ 0.98
UPF1-209ENST00000600310 LIG4P49917 911 aa21.2■□□□□ 0.98
UPF1-209ENST00000600310 MPZL3Q6UWV2 235 aa21.2■□□□□ 0.98
UPF1-209ENST00000600310 EPM2AIP1Q7L775 607 aaPredicted RBP21.2■□□□□ 0.98
UPF1-209ENST00000600310 RNF169Q8NCN4 708 aa21.2■□□□□ 0.98
UPF1-209ENST00000600310 ACCSQ96QU6 501 aa21.2■□□□□ 0.98
UPF1-209ENST00000600310 RC3H2Q9HBD1 1191 aaKnown RBP21.2■□□□□ 0.98
UPF1-209ENST00000600310 MSRAQ9UJ68 235 aa21.2■□□□□ 0.98
UPF1-209ENST00000600310 YBX2Q9Y2T7 364 aaKnown RBP21.2■□□□□ 0.98
UPF1-209ENST00000600310 LAMA3Q16787 3333 aa21.19■□□□□ 0.98
UPF1-209ENST00000600310 HNRNPDLO14979 420 aaKnown RBP21.19■□□□□ 0.98
UPF1-209ENST00000600310 FGFR1P11362 822 aa21.19■□□□□ 0.98
UPF1-209ENST00000600310 MYOGP15173 224 aa21.19■□□□□ 0.98
UPF1-209ENST00000600310 KCNA1Q09470 495 aa21.19■□□□□ 0.98
UPF1-209ENST00000600310 ZNF568Q3ZCX4 644 aa21.19■□□□□ 0.98
UPF1-209ENST00000600310 AGMOQ6ZNB7 445 aa21.19■□□□□ 0.98
UPF1-209ENST00000600310 HACE1Q8IYU2 909 aa21.19■□□□□ 0.98
UPF1-209ENST00000600310 SPATA20Q8TB22 786 aa21.19■□□□□ 0.98
UPF1-209ENST00000600310 ZNF507Q8TCN5 953 aa21.19■□□□□ 0.98
UPF1-209ENST00000600310 SP7Q8TDD2 431 aaPredicted RBP21.19■□□□□ 0.98
UPF1-209ENST00000600310 LPPQ93052 612 aa21.19■□□□□ 0.98
UPF1-209ENST00000600310 ZBTB45Q96K62 511 aaPredicted RBP21.19■□□□□ 0.98
UPF1-209ENST00000600310 TCHPQ9BT92 498 aa21.19■□□□□ 0.98
UPF1-209ENST00000600310 CDT1Q9H211 546 aa21.19■□□□□ 0.98
UPF1-209ENST00000600310 NXF3Q9H4D5 531 aaKnown RBP21.19■□□□□ 0.98
UPF1-209ENST00000600310 TMEM206Q9H813 350 aa21.19■□□□□ 0.98
UPF1-209ENST00000600310 SLC39A2Q9NP94 309 aa21.19■□□□□ 0.98
UPF1-209ENST00000600310 HES2Q9Y543 173 aa21.19■□□□□ 0.98
UPF1-209ENST00000600310 PTPRSQ13332 1948 aa21.19■□□□□ 0.98
UPF1-209ENST00000600310 MEIS3P2A8K0S8 358 aa21.18■□□□□ 0.98
UPF1-209ENST00000600310 SOX1O00570 391 aaPredicted RBP21.18■□□□□ 0.98
UPF1-209ENST00000600310 CLDN3O15551 220 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms