RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 ZNF720Q7Z2F6 126 aa17.03■□□□□ 0.32
SS18-216ENST00000580751 RTN4RL1Q86UN2 441 aaPredicted RBP17.03■□□□□ 0.32
SS18-216ENST00000580751 MYOCDQ8IZQ8 938 aa17.03■□□□□ 0.32
SS18-216ENST00000580751 NAT10Q9H0A0 1025 aaKnown RBP17.03■□□□□ 0.32
SS18-216ENST00000580751 TSPY26PQ9H489 355 aa17.03■□□□□ 0.32
SS18-216ENST00000580751 EXOC1Q9NV70 894 aa17.03■□□□□ 0.32
SS18-216ENST00000580751 DACH1Q9UI36 760 aa17.03■□□□□ 0.32
SS18-216ENST00000580751 A0A1B0GUA9 196 aa17.02■□□□□ 0.32
SS18-216ENST00000580751 C9IYK1 514 aa17.02■□□□□ 0.32
SS18-216ENST00000580751 RBAK-RBAKDNI3L0D1 243 aa17.02■□□□□ 0.32
SS18-216ENST00000580751 N4BP3O15049 544 aa17.02■□□□□ 0.32
SS18-216ENST00000580751 GCNT3O95395 438 aa17.02■□□□□ 0.32
SS18-216ENST00000580751 RPN1P04843 607 aaKnown RBP17.02■□□□□ 0.32
SS18-216ENST00000580751 STAG3L1P0CL83 205 aa17.02■□□□□ 0.32
SS18-216ENST00000580751 EHHADHQ08426 723 aa17.02■□□□□ 0.32
SS18-216ENST00000580751 PSMD2Q13200 908 aa17.02■□□□□ 0.32
SS18-216ENST00000580751 SLC27A1Q6PCB7 646 aa17.02■□□□□ 0.32
SS18-216ENST00000580751 TAS1R3Q7RTX0 852 aa17.02■□□□□ 0.32
SS18-216ENST00000580751 APBB1IPQ7Z5R6 666 aaPredicted RBP17.02■□□□□ 0.32
SS18-216ENST00000580751 NPAS4Q8IUM7 802 aa17.02■□□□□ 0.32
SS18-216ENST00000580751 MLKLQ8NB16 471 aa17.02■□□□□ 0.32
SS18-216ENST00000580751 CPB2Q96IY4 423 aa17.02■□□□□ 0.32
SS18-216ENST00000580751 TBC1D7Q9P0N9 293 aa17.02■□□□□ 0.32
SS18-216ENST00000580751 TBX20Q9UMR3 447 aa17.02■□□□□ 0.32
SS18-216ENST00000580751 PCDHB13Q9Y5F0 798 aa17.02■□□□□ 0.32
SS18-216ENST00000580751 TTC3P53804 2025 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 A0A0U1RQF3 1178 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 PPP1R37O75864 691 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 RHOBTB3O94955 611 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 PRR29P0C7W0 189 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 MORC3Q14149 939 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 ATF7IP2Q5U623 682 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 ZPBP2Q6X784 338 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 MAP4K3Q8IVH8 894 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 HERC6Q8IVU3 1022 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 TOP1MTQ969P6 601 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 BICD1Q96G01 975 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 ADPGKQ9BRR6 497 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 TRIM6Q9C030 488 aaPredicted RBP17.01■□□□□ 0.31
SS18-216ENST00000580751 PDZD7Q9H5P4 517 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 ELAC1Q9H777 363 aaKnown RBP17.01■□□□□ 0.31
SS18-216ENST00000580751 FAM105AQ9NUU6 356 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 TMEM161AQ9NX61 479 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 LRFN2Q9ULH4 789 aa17.01■□□□□ 0.31
SS18-216ENST00000580751 LAMA2P24043 3122 aaKnown RBP17■□□□□ 0.31
SS18-216ENST00000580751 HSFX4A0A1B0GTS1 333 aaPredicted RBP17■□□□□ 0.31
SS18-216ENST00000580751 HSFX3A0A1B0GWH4 333 aaPredicted RBP17■□□□□ 0.31
SS18-216ENST00000580751 HNRNPDLO14979 420 aaKnown RBP17■□□□□ 0.31
SS18-216ENST00000580751 KLRC4O43908 158 aa17■□□□□ 0.31
SS18-216ENST00000580751 GJB5O95377 273 aa17■□□□□ 0.31
SS18-216ENST00000580751 EDN1P05305 212 aa17■□□□□ 0.31
SS18-216ENST00000580751 FAM189BP81408 668 aa17■□□□□ 0.31
SS18-216ENST00000580751 GSE1Q14687 1217 aa17■□□□□ 0.31
SS18-216ENST00000580751 DCAF4L1Q3SXM0 396 aa17■□□□□ 0.31
SS18-216ENST00000580751 LRIT3Q3SXY7 679 aa17■□□□□ 0.31
SS18-216ENST00000580751 KMT5BQ4FZB7 885 aa17■□□□□ 0.31
SS18-216ENST00000580751 ZC2HC1CQ53FD0 456 aaPredicted RBP17■□□□□ 0.31
SS18-216ENST00000580751 COBLL1Q53SF7 1204 aa17■□□□□ 0.31
SS18-216ENST00000580751 ECHDC2Q86YB7 292 aa17■□□□□ 0.31
SS18-216ENST00000580751 HACE1Q8IYU2 909 aa17■□□□□ 0.31
SS18-216ENST00000580751 ACO2Q99798 780 aaKnown RBP17■□□□□ 0.31
SS18-216ENST00000580751 BPIFA3Q9BQP9 254 aa17■□□□□ 0.31
SS18-216ENST00000580751 TARS2Q9BW92 718 aaKnown RBP17■□□□□ 0.31
SS18-216ENST00000580751 STRA6Q9BX79 667 aa17■□□□□ 0.31
SS18-216ENST00000580751 MAN1B1Q9UKM7 699 aa17■□□□□ 0.31
SS18-216ENST00000580751 EXOC7Q9UPT5 735 aa17■□□□□ 0.31
SS18-216ENST00000580751 TNFSF13BQ9Y275 285 aa17■□□□□ 0.31
SS18-216ENST00000580751 PCDHB7Q9Y5E2 793 aa17■□□□□ 0.31
SS18-216ENST00000580751 UBE4BO95155 1302 aa16.99■□□□□ 0.31
SS18-216ENST00000580751 TTLL13PA6NNM8 815 aa16.99■□□□□ 0.31
SS18-216ENST00000580751 EIF3DO15371 548 aaKnown RBP eCLIP16.99■□□□□ 0.31
SS18-216ENST00000580751 HOXA2O43364 376 aa16.99■□□□□ 0.31
SS18-216ENST00000580751 ZNF623O75123 536 aa16.99■□□□□ 0.31
SS18-216ENST00000580751 TOM1L1O75674 476 aa16.99■□□□□ 0.31
SS18-216ENST00000580751 EOMESO95936 686 aa16.99■□□□□ 0.31
SS18-216ENST00000580751 PIGRP01833 764 aa16.99■□□□□ 0.31
SS18-216ENST00000580751 MYBP10242 640 aa16.99■□□□□ 0.31
SS18-216ENST00000580751 LIG4P49917 911 aa16.99■□□□□ 0.31
SS18-216ENST00000580751 CASP5P51878 434 aa16.99■□□□□ 0.31
SS18-216ENST00000580751 UBXN11Q5T124 520 aa16.99■□□□□ 0.31
SS18-216ENST00000580751 L1TD1Q5T7N2 865 aaKnown RBP16.99■□□□□ 0.31
SS18-216ENST00000580751 ZNF658Q5TYW1 1059 aaPredicted RBP16.99■□□□□ 0.31
SS18-216ENST00000580751 HPS3Q969F9 1004 aa16.99■□□□□ 0.31
SS18-216ENST00000580751 PGBD4Q96DM1 585 aa16.99■□□□□ 0.31
SS18-216ENST00000580751 ACCSQ96QU6 501 aa16.99■□□□□ 0.31
SS18-216ENST00000580751 ZBED2Q9BTP6 218 aa16.99■□□□□ 0.31
SS18-216ENST00000580751 PCDHB2Q9Y5E7 798 aa16.99■□□□□ 0.31
SS18-216ENST00000580751 PTPRSQ13332 1948 aa16.98■□□□□ 0.31
SS18-216ENST00000580751 UPP2O95045 317 aa16.98■□□□□ 0.31
SS18-216ENST00000580751 NPTXRO95502 500 aa16.98■□□□□ 0.31
SS18-216ENST00000580751 IBSPP21815 317 aaPredicted RBP16.98■□□□□ 0.31
SS18-216ENST00000580751 RAB30Q15771 203 aa16.98■□□□□ 0.31
SS18-216ENST00000580751 ZNF568Q3ZCX4 644 aa16.98■□□□□ 0.31
SS18-216ENST00000580751 MPZL3Q6UWV2 235 aa16.98■□□□□ 0.31
SS18-216ENST00000580751 ZNF598Q86UK7 904 aaKnown RBP16.98■□□□□ 0.31
SS18-216ENST00000580751 CDR2LQ86X02 465 aaPredicted RBP16.98■□□□□ 0.31
SS18-216ENST00000580751 CRIPAKQ8N1N5 446 aa16.98■□□□□ 0.31
SS18-216ENST00000580751 RNF169Q8NCN4 708 aa16.98■□□□□ 0.31
SS18-216ENST00000580751 RSPH1Q8WYR4 309 aa16.98■□□□□ 0.31
SS18-216ENST00000580751 TCHPQ9BT92 498 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms