RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 ACCSQ96QU6 501 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 FIZ1Q96SL8 496 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 ACO2Q99798 780 aaKnown RBP15.11■□□□□ 0.01
PTCH1-213ENST00000546820 TARS2Q9BW92 718 aaKnown RBP15.11■□□□□ 0.01
PTCH1-213ENST00000546820 GTPBP4Q9BZE4 634 aaKnown RBP15.11■□□□□ 0.01
PTCH1-213ENST00000546820 TMEM206Q9H813 350 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 UBN1Q9NPG3 1134 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 FAM105AQ9NUU6 356 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 MSRAQ9UJ68 235 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 INSL6Q9Y581 213 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 PCDHB2Q9Y5E7 798 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 TLL1O43897 1013 aa15.1■□□□□ 0.01
PTCH1-213ENST00000546820 KIF20AO95235 890 aa15.1■□□□□ 0.01
PTCH1-213ENST00000546820 GJB5O95377 273 aa15.1■□□□□ 0.01
PTCH1-213ENST00000546820 MATR3P43243 847 aaKnown RBP eCLIP15.1■□□□□ 0.01
PTCH1-213ENST00000546820 LIG4P49917 911 aa15.1■□□□□ 0.01
PTCH1-213ENST00000546820 SMAD3P84022 425 aaKnown RBP15.1■□□□□ 0.01
PTCH1-213ENST00000546820 KCNB1Q14721 858 aa15.1■□□□□ 0.01
PTCH1-213ENST00000546820 DCAF4L1Q3SXM0 396 aa15.1■□□□□ 0.01
PTCH1-213ENST00000546820 KMT5BQ4FZB7 885 aa15.1■□□□□ 0.01
PTCH1-213ENST00000546820 ZC2HC1CQ53FD0 456 aaPredicted RBP15.1■□□□□ 0.01
PTCH1-213ENST00000546820 L1TD1Q5T7N2 865 aaKnown RBP15.1■□□□□ 0.01
PTCH1-213ENST00000546820 FAM117BQ6P1L5 589 aa15.1■□□□□ 0.01
PTCH1-213ENST00000546820 TAS1R3Q7RTX0 852 aa15.1■□□□□ 0.01
PTCH1-213ENST00000546820 SYCP3Q8IZU3 236 aa15.1■□□□□ 0.01
PTCH1-213ENST00000546820 RSPH1Q8WYR4 309 aa15.1■□□□□ 0.01
PTCH1-213ENST00000546820 SMARCE1Q969G3 411 aa15.1■□□□□ 0.01
PTCH1-213ENST00000546820 GSDMAQ96QA5 445 aa15.1■□□□□ 0.01
PTCH1-213ENST00000546820 RAD9AQ99638 391 aa15.1■□□□□ 0.01
PTCH1-213ENST00000546820 MICAL3Q7RTP6 2002 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 HNRNPDLO14979 420 aaKnown RBP15.09■□□□□ 0.01
PTCH1-213ENST00000546820 EIF3DO15371 548 aaKnown RBP eCLIP15.09■□□□□ 0.01
PTCH1-213ENST00000546820 CLDN3O15551 220 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 KLRC4O43908 158 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 TOM1L1O75674 476 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 NPTXRO95502 500 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 PRR29P0C7W0 189 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 ITGA4P13612 1032 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 EHHADHQ08426 723 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 PNOCQ13519 176 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 RAB30Q15771 203 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 UBXN11Q5T124 520 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 SLFN12LQ6IEE8 588 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 MRPL10Q7Z7H8 261 aaKnown RBP15.09■□□□□ 0.01
PTCH1-213ENST00000546820 MAP4K3Q8IVH8 894 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 ABI1Q8IZP0 508 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 RNF169Q8NCN4 708 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 YME1L1Q96TA2 773 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 STRA6Q9BX79 667 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 PDZD7Q9H5P4 517 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 SLC39A2Q9NP94 309 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 PCDHA11Q9Y5I1 949 aa15.09■□□□□ 0.01
PTCH1-213ENST00000546820 TTLL13PA6NNM8 815 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 PPP1R37O75864 691 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 RHOBTB3O94955 611 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 MBD3O95983 291 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 PIGRP01833 764 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 MYBP10242 640 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 MCF2P10911 925 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 PTMSP20962 102 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 MCM4P33991 863 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 KYAT1Q16773 422 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 ZNF568Q3ZCX4 644 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 MPZL3Q6UWV2 235 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 CDR2LQ86X02 465 aaPredicted RBP15.08■□□□□ 0
PTCH1-213ENST00000546820 ZNF507Q8TCN5 953 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 HPS3Q969F9 1004 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 EIF2AQ9BY44 585 aaKnown RBP15.08■□□□□ 0
PTCH1-213ENST00000546820 USP20Q9Y2K6 914 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 PCDHA5Q9Y5H7 936 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 TTC3P53804 2025 aa15.08■□□□□ 0
PTCH1-213ENST00000546820 GRXCR1A8MXD5 290 aa15.07■□□□□ 0
PTCH1-213ENST00000546820 DGKIO75912 1065 aa15.07■□□□□ 0
PTCH1-213ENST00000546820 PRPF6O94906 941 aaKnown RBP15.07■□□□□ 0
PTCH1-213ENST00000546820 HTRA4P83105 476 aaPredicted RBP15.07■□□□□ 0
PTCH1-213ENST00000546820 GLB1LQ6UWU2 654 aa15.07■□□□□ 0
PTCH1-213ENST00000546820 ZBTB33Q86T24 672 aa15.07■□□□□ 0
PTCH1-213ENST00000546820 ZNF598Q86UK7 904 aaKnown RBP15.07■□□□□ 0
PTCH1-213ENST00000546820 CRIPAKQ8N1N5 446 aa15.07■□□□□ 0
PTCH1-213ENST00000546820 PTPRHQ9HD43 1115 aa15.07■□□□□ 0
PTCH1-213ENST00000546820 GIT1Q9Y2X7 761 aa15.07■□□□□ 0
PTCH1-213ENST00000546820 IPPQ9Y573 584 aa15.07■□□□□ 0
PTCH1-213ENST00000546820 UBE4BO95155 1302 aa15.07■□□□□ 0
PTCH1-213ENST00000546820 RBAK-RBAKDNI3L0D1 243 aa15.06■□□□□ 0
PTCH1-213ENST00000546820 EDN1P05305 212 aa15.06■□□□□ 0
PTCH1-213ENST00000546820 PROZP22891 400 aa15.06■□□□□ 0
PTCH1-213ENST00000546820 CASP5P51878 434 aa15.06■□□□□ 0
PTCH1-213ENST00000546820 RABGGTBP53611 331 aa15.06■□□□□ 0
PTCH1-213ENST00000546820 SNRPFP62306 86 aaKnown RBP15.06■□□□□ 0
PTCH1-213ENST00000546820 MCL1Q07820 350 aa15.06■□□□□ 0
PTCH1-213ENST00000546820 STK4Q13043 487 aa15.06■□□□□ 0
PTCH1-213ENST00000546820 NOLC1Q14978 699 aaKnown RBP eCLIP15.06■□□□□ 0
PTCH1-213ENST00000546820 CAMK4Q16566 473 aa15.06■□□□□ 0
PTCH1-213ENST00000546820 EEF1DP3Q658K8 133 aa15.06■□□□□ 0
PTCH1-213ENST00000546820 FAM109BQ6ICB4 259 aaPredicted RBP15.06■□□□□ 0
PTCH1-213ENST00000546820 EPM2AIP1Q7L775 607 aaPredicted RBP15.06■□□□□ 0
PTCH1-213ENST00000546820 TMCO2Q7Z6W1 182 aaPredicted RBP15.06■□□□□ 0
PTCH1-213ENST00000546820 SMG8Q8ND04 991 aaKnown RBP15.06■□□□□ 0
PTCH1-213ENST00000546820 SPATA20Q8TB22 786 aa15.06■□□□□ 0
PTCH1-213ENST00000546820 ZBTB45Q96K62 511 aaPredicted RBP15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms