RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 ZNF484Q5JVG2 852 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 FAM26DQ5JW98 314 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 TTC38Q5R3I4 469 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 FAM160B1Q5W0V3 765 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 MFSD5Q6N075 450 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 SWSAP1Q6NVH7 229 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 TRIM67Q6ZTA4 783 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 LINC01465Q8N7H1 131 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 SNIP1Q8TAD8 396 aaKnown RBP7.55□□□□□ -1.2
VPS52-219ENST00000493379 CAGE1Q8TC20 777 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 DHX38Q92620 1227 aaKnown RBP7.55□□□□□ -1.2
VPS52-219ENST00000493379 EDAQ92838 391 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 NKD2Q969F2 451 aaPredicted RBP7.55□□□□□ -1.2
VPS52-219ENST00000493379 ITPKCQ96DU7 683 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 NOC4LQ9BVI4 516 aaKnown RBP7.55□□□□□ -1.2
VPS52-219ENST00000493379 TRPV6Q9H1D0 765 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 AZI2Q9H6S1 392 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 TTC12Q9H892 705 aaPredicted RBP7.55□□□□□ -1.2
VPS52-219ENST00000493379 ZNF302Q9NR11 478 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 NOL7Q9UMY1 257 aaKnown RBP7.55□□□□□ -1.2
VPS52-219ENST00000493379 PCDHB6Q9Y5E3 794 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 PCDHA2Q9Y5H9 948 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 BPTFQ12830 3046 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 COL1A2P08123 1366 aa7.55□□□□□ -1.2
VPS52-219ENST00000493379 FRYQ5TBA9 3013 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 C17orf102A2RUQ5 167 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 H3BQV1 296 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 SLC26A4O43511 780 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 DKC1O60832 514 aaKnown RBP eCLIP7.54□□□□□ -1.2
VPS52-219ENST00000493379 BMP15O95972 392 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 OR52Z1P0C646 297 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 SPATA31C1P0DKV0 1188 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 INSRRP14616 1297 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 RPA1P27694 616 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 AVPR2P30518 371 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 QARSP47897 775 aaKnown RBP7.54□□□□□ -1.2
VPS52-219ENST00000493379 PSMC5P62195 406 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 PPIGQ13427 754 aaKnown RBP eCLIP7.54□□□□□ -1.29e-8■■□□□ 12.5
VPS52-219ENST00000493379 PTPAQ15257 358 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 ZNF174Q15697 407 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 IL17AQ16552 155 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 CALCRLQ16602 461 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 PTGISQ16647 500 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 XKR3Q5GH77 459 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 HERC4Q5GLZ8 1057 aaPredicted RBP7.54□□□□□ -1.2
VPS52-219ENST00000493379 HYIQ5T013 277 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 ATL3Q6DD88 541 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 TAF2Q6P1X5 1199 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 OTOP2Q7RTS6 562 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 MIER3Q7Z3K6 550 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 NME8Q8N427 588 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 C7orf31Q8N865 590 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 NEK9Q8TD19 979 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 LMBR1Q8WVP7 490 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 GLG1Q92896 1179 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 GJA10Q969M2 543 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 FAM167AQ96KS9 214 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 ASB16Q96NS5 453 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 POLR3CQ9BUI4 534 aaPredicted RBP7.54□□□□□ -1.2
VPS52-219ENST00000493379 NRBP2Q9NSY0 501 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 TRMT13Q9NUP7 481 aaKnown RBP7.54□□□□□ -1.2
VPS52-219ENST00000493379 SETD4Q9NVD3 440 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 SQORQ9Y6N5 450 aa7.54□□□□□ -1.2
VPS52-219ENST00000493379 KDM3AQ9Y4C1 1321 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 SMIM35A0A1B0GVV1 85 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 MAGEB2O15479 319 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 TREHO43280 583 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 SORBS3O60504 671 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 CXCL10P02778 98 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 IQCF3P0C7M6 154 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 ZNF16P17020 682 aaPredicted RBP7.53□□□□□ -1.2
VPS52-219ENST00000493379 MPSTP25325 297 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 MCM7P33993 719 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 RFC2P35250 354 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 TXKP42681 527 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 PTGIRP43119 386 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 NASPP49321 788 aaPredicted RBP7.53□□□□□ -1.2
VPS52-219ENST00000493379 ZNF200P98182 395 aaPredicted RBP7.53□□□□□ -1.2
VPS52-219ENST00000493379 BFSP2Q13515 415 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 GRIK4Q16099 956 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 UGCGQ16739 394 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 COX20Q5RI15 118 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 UTP14CQ5TAP6 766 aaKnown RBP7.53□□□□□ -1.2
VPS52-219ENST00000493379 ANO5Q75V66 913 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 ZNF295-AS1Q8N0V1 137 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 GDPD5Q8WTR4 605 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 ATP6V0A1Q93050 837 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 MMTAG2Q9BU76 263 aaKnown RBP7.53□□□□□ -1.2
VPS52-219ENST00000493379 IRF2BPLQ9H1B7 796 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 WNT8AQ9H1J5 351 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 HIPK3Q9H422 1215 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 ZSWIM4Q9H7M6 989 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 TUFT1Q9NNX1 390 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 WRAP73Q9P2S5 460 aaPredicted RBP7.53□□□□□ -1.2
VPS52-219ENST00000493379 GABBR1Q9UBS5 961 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 CEP131Q9UPN4 1083 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 ZDHHC9Q9Y397 364 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 PCDHA11Q9Y5I1 949 aa7.53□□□□□ -1.2
VPS52-219ENST00000493379 USP9XQ93008 2570 aaPredicted RBP7.53□□□□□ -1.2
VPS52-219ENST00000493379 SOBPA7XYQ1 873 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms