RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 IL23AQ9NPF7 189 aa5.46□□□□□ -1.54
USP40-204ENST00000427947 PPP4R1LQ9P1A2 415 aa5.46□□□□□ -1.54
USP40-204ENST00000427947 INTUQ9ULD6 942 aa5.46□□□□□ -1.54
USP40-204ENST00000427947 GIT1Q9Y2X7 761 aa5.46□□□□□ -1.54
USP40-204ENST00000427947 A0A0G2JLL6 359 aaPredicted RBP5.45□□□□□ -1.54
USP40-204ENST00000427947 NPEPPSL1A6NEC2 478 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 NRP1O14786 923 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 PHF2O75151 1096 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 SCGB1D2O95969 90 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 HOXA5P20719 270 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 ADKP55263 362 aaKnown RBP5.45□□□□□ -1.54
USP40-204ENST00000427947 DUSP2Q05923 314 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 MGAT2Q10469 447 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 LRRC41Q15345 812 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 NFE2Q16621 373 aaPredicted RBP5.45□□□□□ -1.54
USP40-204ENST00000427947 C19orf54Q5BKX5 351 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 ADGRE4PQ86SQ3 457 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 GPR135Q8IZ08 494 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 CMTM4Q8IZR5 234 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 FBXO41Q8TF61 875 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 JPH3Q8WXH2 748 aaPredicted RBP5.45□□□□□ -1.54
USP40-204ENST00000427947 DPF2Q92785 391 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 OR14A2Q96R54 314 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 KRTAP9-2Q9BYQ4 174 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 SERPINB13Q9UIV8 391 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 ANKRD6Q9Y2G4 727 aa5.45□□□□□ -1.54
USP40-204ENST00000427947 UBE2QL1A1L167 161 aa5.44□□□□□ -1.54
USP40-204ENST00000427947 PMS2P1A4D2B8 440 aa5.44□□□□□ -1.54
USP40-204ENST00000427947 ITGA10O75578 1167 aa5.44□□□□□ -1.54
USP40-204ENST00000427947 GYPEP15421 78 aa5.44□□□□□ -1.54
USP40-204ENST00000427947 CASRP41180 1078 aa5.44□□□□□ -1.54
USP40-204ENST00000427947 FZD5Q13467 585 aa5.44□□□□□ -1.54
USP40-204ENST00000427947 GJC2Q5T442 439 aaPredicted RBP5.44□□□□□ -1.54
USP40-204ENST00000427947 GLB1LQ6UWU2 654 aa5.44□□□□□ -1.54
USP40-204ENST00000427947 Q6ZVL8 140 aa5.44□□□□□ -1.54
USP40-204ENST00000427947 MIGA2Q7L4E1 593 aa5.44□□□□□ -1.54
USP40-204ENST00000427947 LIMS2Q7Z4I7 341 aa5.44□□□□□ -1.54
USP40-204ENST00000427947 OR5M3Q8NGP4 307 aa5.44□□□□□ -1.54
USP40-204ENST00000427947 OR2I1PQ8NGU4 316 aa5.44□□□□□ -1.54
USP40-204ENST00000427947 COA7Q96BR5 231 aa5.44□□□□□ -1.54
USP40-204ENST00000427947 UHRF1Q96T88 793 aaPredicted RBP5.44□□□□□ -1.54
USP40-204ENST00000427947 PLA2G12BQ9BX93 195 aa5.44□□□□□ -1.54
USP40-204ENST00000427947 AGO3Q9H9G7 860 aaKnown RBP5.44□□□□□ -1.54
USP40-204ENST00000427947 RTEL1Q9NZ71 1219 aa5.44□□□□□ -1.54
USP40-204ENST00000427947 GPRC5DQ9NZD1 345 aa5.44□□□□□ -1.54
USP40-204ENST00000427947 FAM171A2A8MVW0 826 aa5.43□□□□□ -1.54
USP40-204ENST00000427947 ADCY6O43306 1168 aa5.43□□□□□ -1.54
USP40-204ENST00000427947 ENDOD1O94919 500 aa5.43□□□□□ -1.54
USP40-204ENST00000427947 NPEPPSP55786 919 aa5.43□□□□□ -1.54
USP40-204ENST00000427947 PER3P56645 1201 aa5.43□□□□□ -1.54
USP40-204ENST00000427947 DUSP8Q13202 625 aa5.43□□□□□ -1.54
USP40-204ENST00000427947 SEPT2Q15019 361 aa5.43□□□□□ -1.54
USP40-204ENST00000427947 CIR1Q86X95 450 aaPredicted RBP5.43□□□□□ -1.54
USP40-204ENST00000427947 TPH2Q8IWU9 490 aa5.43□□□□□ -1.54
USP40-204ENST00000427947 CHPFQ8IZ52 775 aa5.43□□□□□ -1.54
USP40-204ENST00000427947 LILRA3Q8N6C8 439 aaPredicted RBP5.43□□□□□ -1.54
USP40-204ENST00000427947 HOXB13Q92826 284 aaPredicted RBP5.43□□□□□ -1.54
USP40-204ENST00000427947 TMEM176AQ96HP8 235 aa5.43□□□□□ -1.54
USP40-204ENST00000427947 CAMKK2Q96RR4 588 aa5.43□□□□□ -1.54
USP40-204ENST00000427947 CDC5LQ99459 802 aaKnown RBP5.43□□□□□ -1.54
USP40-204ENST00000427947 NUP88Q99567 741 aaPredicted RBP5.43□□□□□ -1.54
USP40-204ENST00000427947 C7orf25Q9BPX7 421 aa5.43□□□□□ -1.54
USP40-204ENST00000427947 TCF25Q9BQ70 676 aa5.43□□□□□ -1.54
USP40-204ENST00000427947 MSL2Q9HCI7 577 aa5.43□□□□□ -1.54
USP40-204ENST00000427947 TRPS1Q9UHF7 1281 aa5.43□□□□□ -1.54
USP40-204ENST00000427947 NOB1Q9ULX3 412 aaKnown RBP5.43□□□□□ -1.54
USP40-204ENST00000427947 LIMCH1Q9UPQ0 1083 aa5.43□□□□□ -1.54
USP40-204ENST00000427947 CCDC154A6NI56 674 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 GPR42O15529 346 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 HTRA2O43464 458 aaPredicted RBP5.42□□□□□ -1.54
USP40-204ENST00000427947 TSPAN6O43657 245 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 RFPL1O75677 317 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 PARNO95453 639 aaKnown RBP5.42□□□□□ -1.54
USP40-204ENST00000427947 VCAM1P19320 739 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 CRHR1P34998 444 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 RPS19P39019 145 aaKnown RBP5.42□□□□□ -1.54
USP40-204ENST00000427947 GRM7Q14831 915 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 NFIXQ14938 502 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 C3orf36Q3SXR2 165 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 TCTN3Q6NUS6 607 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 TTLL10Q6ZVT0 673 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 CATIPQ7Z7H3 387 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 FMNL3Q8IVF7 1028 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 RHOT1Q8IXI2 618 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 FUKQ8N0W3 1084 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 FBXO18Q8NFZ0 1043 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 OR7D4Q8NG98 312 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.42□□□□□ -1.54
USP40-204ENST00000427947 MDM1Q8TC05 714 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 TSR2Q969E8 191 aaKnown RBP5.42□□□□□ -1.54
USP40-204ENST00000427947 HDAC10Q969S8 669 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 ARL8AQ96BM9 186 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 BDH2Q9BUT1 245 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 EPC1Q9H2F5 836 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 NELFAQ9H3P2 528 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 BCO1Q9HAY6 547 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 PNMA8BQ9ULN7 279 aaPredicted RBP5.42□□□□□ -1.54
USP40-204ENST00000427947 ZFR2Q9UPR6 939 aaKnown RBP5.42□□□□□ -1.54
USP40-204ENST00000427947 IPPQ9Y573 584 aa5.42□□□□□ -1.54
USP40-204ENST00000427947 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms