RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 TSPYL4Q9UJ04 414 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 USP16Q9Y5T5 823 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 B3GALT1Q9Y5Z6 326 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 DUSP10Q9Y6W6 482 aa3.17□□□□□ -1.9
VPS13A-208ENST00000423463 PAPPAQ13219 1627 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 B4E1Z4 1266 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 RFPL3O75679 317 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 A1BGP04217 495 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 CYP1A1P04798 512 aaPredicted RBP3.16□□□□□ -1.9
VPS13A-208ENST00000423463 ZNF853P0CG23 659 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 ZBTB48P10074 688 aaPredicted RBP3.16□□□□□ -1.9
VPS13A-208ENST00000423463 SLC9A1P19634 815 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 PTGS1P23219 599 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 AOAHP28039 575 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 GJA4P35212 333 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 FERMT3Q86UX7 667 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 WDR63Q8IWG1 891 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 TXNDC5Q8NBS9 432 aaKnown RBP3.16□□□□□ -1.9
VPS13A-208ENST00000423463 HIPK4Q8NE63 616 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 GBP4Q96PP9 640 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 CHMP4AQ9BY43 222 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 TMX1Q9H3N1 280 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 KCNH7Q9NS40 1196 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 KCND1Q9NSA2 647 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 USP40Q9NVE5 1235 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 IFT57Q9NWB7 429 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 NARFQ9UHQ1 456 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 ZNF831Q5JPB2 1677 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 SOS1Q07889 1333 aaPredicted RBP3.16□□□□□ -1.9
VPS13A-208ENST00000423463 CBX4O00257 560 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 PDE8AO60658 829 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 ENO2P09104 434 aaPredicted RBP3.16□□□□□ -1.9
VPS13A-208ENST00000423463 HOXB7P09629 217 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 MYCLP1P12525 358 aaPredicted RBP3.16□□□□□ -1.9
VPS13A-208ENST00000423463 GYS2P54840 703 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 GJA9P57773 515 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 IL13RA1P78552 427 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 KRTAP19-4Q3LI73 84 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 ZNF662Q6ZS27 426 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 SMIM5Q71RC9 77 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 NUDT10Q8NFP7 164 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 IGDCC4Q8TDY8 1250 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 MFSD3Q96ES6 412 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 NUDT11Q96G61 164 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 PCIF1Q9H4Z3 704 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 LUC7LQ9NQ29 371 aaKnown RBP3.16□□□□□ -1.9
VPS13A-208ENST00000423463 INCENPQ9NQS7 918 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 INTS7Q9NVH2 962 aaKnown RBP3.16□□□□□ -1.9
VPS13A-208ENST00000423463 HSPBP1Q9NZL4 362 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 ZBTB1Q9Y2K1 713 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 LAS1LQ9Y4W2 734 aaKnown RBP3.16□□□□□ -1.9
VPS13A-208ENST00000423463 KCPQ6ZWJ8 1503 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 IL16Q14005 1332 aa3.16□□□□□ -1.9
VPS13A-208ENST00000423463 C4BP0C0L5 1744 aa3.15□□□□□ -1.9
VPS13A-208ENST00000423463 PRAMEF22A3QJZ6 481 aa3.15□□□□□ -1.9
VPS13A-208ENST00000423463 FOXP2O15409 715 aa3.15□□□□□ -1.9
VPS13A-208ENST00000423463 PRICKLE3O43900 615 aaPredicted RBP3.15□□□□□ -1.9
VPS13A-208ENST00000423463 GYS1P13807 737 aa3.15□□□□□ -1.9
VPS13A-208ENST00000423463 NCLP19338 710 aaKnown RBP3.15□□□□□ -1.9
VPS13A-208ENST00000423463 HOXA5P20719 270 aa3.15□□□□□ -1.9
VPS13A-208ENST00000423463 SMAD2Q15796 467 aaKnown RBP3.15□□□□□ -1.9
VPS13A-208ENST00000423463 FBLN7Q53RD9 439 aa3.15□□□□□ -1.9
VPS13A-208ENST00000423463 UBE2R2Q712K3 238 aaPredicted RBP3.15□□□□□ -1.9
VPS13A-208ENST00000423463 OTOP1Q7RTM1 612 aa3.15□□□□□ -1.9
VPS13A-208ENST00000423463 KIAA1958Q8N8K9 716 aa3.15□□□□□ -1.9
VPS13A-208ENST00000423463 LEO1Q8WVC0 666 aaPredicted RBP3.15□□□□□ -1.9
VPS13A-208ENST00000423463 AMNQ9BXJ7 453 aa3.15□□□□□ -1.9
VPS13A-208ENST00000423463 MS4A5Q9H3V2 200 aa3.15□□□□□ -1.9
VPS13A-208ENST00000423463 FTSJ1Q9UET6 329 aa3.15□□□□□ -1.9
VPS13A-208ENST00000423463 PLAAQ9Y263 795 aa3.15□□□□□ -1.9
VPS13A-208ENST00000423463 PTPN22Q9Y2R2 807 aa3.15□□□□□ -1.9
VPS13A-208ENST00000423463 USP42Q9H9J4 1324 aaKnown RBP3.15□□□□□ -1.9
VPS13A-208ENST00000423463 A0A087X0B3 334 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 LCHNA4D1U4 455 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 NOBOXO60393 691 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 KLHL18O94889 574 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 MPIG6BO95866 241 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 KNG1P01042 644 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 TM4SF1P30408 202 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 CNR2P34972 360 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 FLT3P36888 993 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 RRADP55042 308 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 CAP1Q01518 475 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 CREB3L3Q68CJ9 461 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 CLEC4GQ6UXB4 293 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 DLG3Q92796 817 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 SYT17Q9BSW7 474 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 PCDH18Q9HCL0 1135 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 THG1LQ9NWX6 298 aaKnown RBP3.15□□□□□ -1.91
VPS13A-208ENST00000423463 SRP68Q9UHB9 627 aaKnown RBP3.15□□□□□ -1.91
VPS13A-208ENST00000423463 CDC42EP3Q9UKI2 254 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.15□□□□□ -1.91
VPS13A-208ENST00000423463 ZDHHC9Q9Y397 364 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 C5P01031 1676 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 COL15A1P39059 1388 aa3.15□□□□□ -1.91
VPS13A-208ENST00000423463 ANKRD62A6NC57 917 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 ERVV-1B6SEH8 477 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 MMP10P09238 476 aa3.14□□□□□ -1.91
VPS13A-208ENST00000423463 ATP2A2P16615 1042 aaKnown RBP3.14□□□□□ -1.91
VPS13A-208ENST00000423463 EIF2S2P20042 333 aaKnown RBP3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms