RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SMIM10L2AP0DMW4 78 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 SMIM10L2BP0DMW5 78 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 ELF1P32519 619 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 CYLC1P35663 651 aaPredicted RBP11.12□□□□□ -0.63
COL6A3-205ENST00000392004 STAT1P42224 750 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 LONRF2Q1L5Z9 754 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 VSTM4Q8IW00 320 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 DHTKD1Q96HY7 919 aaPredicted RBP11.12□□□□□ -0.63
COL6A3-205ENST00000392004 PNMA5Q96PV4 448 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 ADAM21Q9UKJ8 722 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 UBIAD1Q9Y5Z9 338 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 CASTOR2A6NHX0 329 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 FARP2O94887 1054 aaPredicted RBP11.12□□□□□ -0.63
COL6A3-205ENST00000392004 IL17AQ16552 155 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 TRIM65Q6PJ69 517 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 GLB1LQ6UWU2 654 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 HDXQ7Z353 690 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 INPP4AQ96PE3 977 aaPredicted RBP11.12□□□□□ -0.63
COL6A3-205ENST00000392004 CACNA1SQ13698 1873 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 P4HA1P13674 534 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 CASP14P31944 242 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 ACTN2P35609 894 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 HSD17B4P51659 736 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 ECM1Q16610 540 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 Q4G0T1 1027 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 CCDC70Q6NSX1 233 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 CBWD2Q8IUF1 395 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 REXO1L1PQ8IX06 675 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 TNS4Q8IZW8 715 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 FBXL16Q8N461 479 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 SYT2Q8N9I0 419 aaPredicted RBP11.12□□□□□ -0.63
COL6A3-205ENST00000392004 CTTNBP2NLQ9P2B4 639 aa11.12□□□□□ -0.63
COL6A3-205ENST00000392004 RRP15Q9Y3B9 282 aaKnown RBP11.12□□□□□ -0.63
COL6A3-205ENST00000392004 EMSYQ7Z589 1322 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 SPATA31C2B4DYI2 1134 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 THAP12O43422 761 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 TADA2AO75478 443 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 PSMD10O75832 226 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 AFPP02771 609 aaKnown RBP11.11□□□□□ -0.63
COL6A3-205ENST00000392004 GUCY2FP51841 1108 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 GYS2P54840 703 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 DRP2Q13474 957 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 KIAA0319LQ8IZA0 1049 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 TRIML1Q8N9V2 468 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 SLC5A5Q92911 643 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 LPPQ93052 612 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 CAPZA3Q96KX2 299 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 C2orf40Q9H1Z8 148 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 METTL14Q9HCE5 456 aaKnown RBP11.11□□□□□ -0.63
COL6A3-205ENST00000392004 MAP3K20Q9NYL2 800 aaKnown RBP11.11□□□□□ -0.63
COL6A3-205ENST00000392004 HSPBP1Q9NZL4 362 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 CCDC151A5D8V7 595 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 SEPT4O43236 478 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 XPOTO43592 962 aaKnown RBP11.11□□□□□ -0.63
COL6A3-205ENST00000392004 ITGA4P13612 1032 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 CPB1P15086 417 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 ATF7P17544 494 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-205ENST00000392004 IGFBP4P22692 258 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 CD52P31358 61 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 KCNH2Q12809 1159 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 ZNF667Q5HYK9 610 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 SLFN12LQ6IEE8 588 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 CEP112Q8N8E3 955 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 ADAM2Q99965 735 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 NDST4Q9H3R1 872 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 SCN9AQ15858 1988 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 NT5C1B-RDH14C9J2C7 533 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 GPC3P51654 580 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 GTF2A1P52655 376 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-205ENST00000392004 CYP27A1Q02318 531 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 KRT31Q15323 416 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 TMEM270Q6UE05 265 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 FAM161BQ96MY7 647 aa11.11□□□□□ -0.63
COL6A3-205ENST00000392004 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.11□□□□□ -0.63
COL6A3-205ENST00000392004 CCDC175P0C221 793 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 CCL5P13501 91 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 SP100P23497 879 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-205ENST00000392004 KIF5AQ12840 1032 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 MYO1EQ12965 1108 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 ZNF699Q32M78 642 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 EPC2Q52LR7 807 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 SFMBT2Q5VUG0 894 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 ANO5Q75V66 913 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 TEX2Q8IWB9 1127 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 COL4A1P02462 1669 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 STK25O00506 426 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 TEX33O43247 280 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 SASH3O75995 380 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 WEE2P0C1S8 567 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 VAMP7P51809 220 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 GIT2Q14161 759 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 NCAPHQ15003 741 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 SPECC1LQ69YQ0 1117 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 TAB3Q8N5C8 712 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-205ENST00000392004 POLR3CQ9BUI4 534 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-205ENST00000392004 ANKEF1Q9NU02 776 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 SNTG2Q9NY99 539 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 CDY2AQ9Y6F7 541 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 PVALEFA0A1B0GWK0 134 aa11.1□□□□□ -0.63
COL6A3-205ENST00000392004 PIK3CDO00329 1044 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms