RNA–Protein interactions for RNA: YGR003W

CUL3, Transcript of Ubiquitin-protein ligase, yeast

Gene CUL3, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUL3	YGR003W	YIL012W	P40551	113 aa		0.84	□□□□□ -2.27
CUL3	YGR003W	INA22	P40576	216 aa		0.84	□□□□□ -2.27
CUL3	YGR003W	GDS1	P41913	522 aa		0.84	□□□□□ -2.27
CUL3	YGR003W	HSH155	P49955	971 aa	Known RBP	0.84	□□□□□ -2.27
CUL3	YGR003W	IRC4	Q03036	179 aa		0.84	□□□□□ -2.27
CUL3	YGR003W	YLR446W	Q06204	433 aa		0.84	□□□□□ -2.27
CUL3	YGR003W	RNR2	P09938	399 aa	Known RBP	0.84	□□□□□ -2.28
CUL3	YGR003W	RBK1	P25332	333 aa		0.84	□□□□□ -2.28
CUL3	YGR003W	MBA1	P38300	278 aa		0.84	□□□□□ -2.28
CUL3	YGR003W	MED8	P38304	223 aa		0.84	□□□□□ -2.28
CUL3	YGR003W	VAB2	P40003	282 aa		0.84	□□□□□ -2.28
CUL3	YGR003W	RIB4	P50861	169 aa	Predicted RBP	0.84	□□□□□ -2.28
CUL3	YGR003W	UBC13	P52490	153 aa		0.84	□□□□□ -2.28
CUL3	YGR003W	TPN1	P53099	579 aa		0.84	□□□□□ -2.28
CUL3	YGR003W	PBP4	Q07362	185 aa	Known RBP	0.84	□□□□□ -2.28
CUL3	YGR003W	YPL245W	Q12179	454 aa	Known RBP	0.84	□□□□□ -2.28
CUL3	YGR003W	IES3	Q12345	250 aa		0.84	□□□□□ -2.28
CUL3	YGR003W	PFK27	Q12471	397 aa	Predicted RBP	0.84	□□□□□ -2.28
CUL3	YGR003W	SWC5	P38326	303 aa		0.83	□□□□□ -2.28
CUL3	YGR003W	SCC4	P40090	624 aa		0.83	□□□□□ -2.28
CUL3	YGR003W	RGM1	Q00453	211 aa		0.83	□□□□□ -2.28
CUL3	YGR003W	CAB5	Q03941	241 aa		0.83	□□□□□ -2.28
CUL3	YGR003W	VPS20	Q04272	221 aa		0.83	□□□□□ -2.28
CUL3	YGR003W	LOA1	Q06508	300 aa		0.83	□□□□□ -2.28
CUL3	YGR003W	DCP1	Q12517	231 aa	Predicted RBP	0.83	□□□□□ -2.28
CUL3	YGR003W	YAK1	P14680	807 aa		0.83	□□□□□ -2.28
CUL3	YGR003W	ITR2	P30606	609 aa		0.83	□□□□□ -2.28
CUL3	YGR003W	ACB1	P31787	87 aa		0.83	□□□□□ -2.28
CUL3	YGR003W	CDC13	P32797	924 aa	Known RBP	0.83	□□□□□ -2.28
CUL3	YGR003W	ZRT1	P32804	376 aa		0.83	□□□□□ -2.28
CUL3	YGR003W	IMP3	P32899	183 aa	Predicted RBP	0.83	□□□□□ -2.28
CUL3	YGR003W	YHL044W	P38727	235 aa		0.83	□□□□□ -2.28
CUL3	YGR003W	SYS1	P41544	203 aa		0.83	□□□□□ -2.28
CUL3	YGR003W	YPT32	P51996	222 aa	Known RBP	0.83	□□□□□ -2.28
CUL3	YGR003W	YGR266W	P53326	701 aa		0.83	□□□□□ -2.28
CUL3	YGR003W	SSU72	P53538	206 aa	Predicted RBP	0.83	□□□□□ -2.28
CUL3	YGR003W	BIO4	P53630	237 aa		0.83	□□□□□ -2.28
CUL3	YGR003W	DBP6	P53734	629 aa	Known RBP	0.83	□□□□□ -2.28
CUL3	YGR003W	CSI1	Q04368	295 aa		0.83	□□□□□ -2.28
CUL3	YGR003W	UTP23	Q12339	254 aa	Known RBP	0.83	□□□□□ -2.28
CUL3	YGR003W	LAG2	Q92325	660 aa		0.83	□□□□□ -2.28
CUL3	YGR003W	BEM2	P39960	2167 aa	Known RBP	0.82	□□□□□ -2.28
CUL3	YGR003W	RPL31A	P0C2H8	113 aa	Known RBP	0.82	□□□□□ -2.28
CUL3	YGR003W	ATG15	P25641	520 aa		0.82	□□□□□ -2.28
CUL3	YGR003W	TPO5	P36029	618 aa		0.82	□□□□□ -2.28
CUL3	YGR003W	PES4	P39684	611 aa		0.82	□□□□□ -2.28
CUL3	YGR003W	UTP25	P40498	721 aa	Known RBP	0.82	□□□□□ -2.28
CUL3	YGR003W	DTD1	Q07648	150 aa	Known RBP	0.82	□□□□□ -2.28
CUL3	YGR003W	PRR2	Q12310	699 aa		0.82	□□□□□ -2.28
CUL3	YGR003W	ATG5	Q12380	294 aa		0.82	□□□□□ -2.28
CUL3	YGR003W	MRX4	Q12467	430 aa		0.82	□□□□□ -2.28
CUL3	YGR003W	AGC1	Q12482	902 aa		0.82	□□□□□ -2.28
CUL3	YGR003W	GAL7	P08431	366 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	YOL163W	P0CF20	169 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	VPH2	P32341	215 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	AIM29	P36154	155 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	YHR035W	P38769	630 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	CAJ1	P39101	391 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	AVT7	P40501	490 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	YJR146W	P47174	117 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	YNL095C	P53932	642 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	PEX30	Q06169	523 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	APC9	Q12107	265 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	YOR114W	Q12219	294 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	PAN1	P32521	1480 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	RAD7	P06779	565 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	MSS116	P15424	664 aa	Known RBP	0.81	□□□□□ -2.28
CUL3	YGR003W	BLI1	P35727	113 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	OSW5	P40219	148 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	YFL064C	P43540	174 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	MRS2	Q01926	470 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	CTS2	Q06350	511 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	CUR1	Q06469	252 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	SPT7	P35177	1332 aa		0.81	□□□□□ -2.28
CUL3	YGR003W	CDC37	P06101	506 aa	Known RBP	0.8	□□□□□ -2.28
CUL3	YGR003W	HIS3	P06633	220 aa		0.8	□□□□□ -2.28
CUL3	YGR003W	SNF6	P18888	332 aa		0.8	□□□□□ -2.28
CUL3	YGR003W	RPL16B	P26785	198 aa	Known RBP	0.8	□□□□□ -2.28
CUL3	YGR003W	YKR032W	P36127	104 aa		0.8	□□□□□ -2.28
CUL3	YGR003W	MRPL3	P36516	390 aa		0.8	□□□□□ -2.28
CUL3	YGR003W	SHQ1	P40486	507 aa	Predicted RBP	0.8	□□□□□ -2.28
CUL3	YGR003W	CDC40	P40968	455 aa	Predicted RBP	0.8	□□□□□ -2.28
CUL3	YGR003W	MIG2	P53035	382 aa		0.8	□□□□□ -2.28
CUL3	YGR003W	YDR114C	Q04597	100 aa		0.8	□□□□□ -2.28
CUL3	YGR003W	SAM4	Q08985	325 aa	Known RBP	0.8	□□□□□ -2.28
CUL3	YGR003W	VIK1	Q12045	647 aa		0.8	□□□□□ -2.28
CUL3	YGR003W	YBL112C	Q3E7Y4	105 aa		0.8	□□□□□ -2.28
CUL3	YGR003W	CAR2	P07991	424 aa	Known RBP	0.8	□□□□□ -2.28
CUL3	YGR003W	PHO80	P20052	293 aa		0.8	□□□□□ -2.28
CUL3	YGR003W	RSA4	P25382	515 aa	Known RBP	0.8	□□□□□ -2.28
CUL3	YGR003W	IMP1	P28627	190 aa		0.8	□□□□□ -2.28
CUL3	YGR003W	MRPL6	P32904	214 aa		0.8	□□□□□ -2.28
CUL3	YGR003W	CSE1	P33307	960 aa		0.8	□□□□□ -2.28
CUL3	YGR003W	END3	P39013	349 aa		0.8	□□□□□ -2.28
CUL3	YGR003W	SSO2	P39926	295 aa		0.8	□□□□□ -2.28
CUL3	YGR003W	OST3	P48439	350 aa		0.8	□□□□□ -2.28
CUL3	YGR003W	PRP24	P49960	444 aa	Known RBP	0.8	□□□□□ -2.28
CUL3	YGR003W	CAB4	P53332	305 aa		0.8	□□□□□ -2.28
CUL3	YGR003W	ALG9	P53868	555 aa	Known RBP	0.8	□□□□□ -2.28
CUL3	YGR003W	YPL039W	Q03080	316 aa		0.8	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 17.7 ms