RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 CES1P23141 567 aa11.59□□□□□ -0.55
SS18-221ENST00000582448 ITGB7P26010 798 aa11.59□□□□□ -0.55
SS18-221ENST00000582448 BAATQ14032 418 aaPredicted RBP11.59□□□□□ -0.55
SS18-221ENST00000582448 RSPO4Q2I0M5 234 aaPredicted RBP11.59□□□□□ -0.55
SS18-221ENST00000582448 CCDC96Q2M329 555 aa11.59□□□□□ -0.55
SS18-221ENST00000582448 DUSP28Q4G0W2 176 aa11.59□□□□□ -0.55
SS18-221ENST00000582448 TMEM31Q5JXX7 168 aa11.59□□□□□ -0.55
SS18-221ENST00000582448 RCSD1Q6JBY9 416 aa11.59□□□□□ -0.55
SS18-221ENST00000582448 RASGRP2Q7LDG7 609 aa11.59□□□□□ -0.55
SS18-221ENST00000582448 TTC16Q8NEE8 873 aa11.59□□□□□ -0.55
SS18-221ENST00000582448 VTA1Q9NP79 307 aa11.59□□□□□ -0.55
SS18-221ENST00000582448 IL17RBQ9NRM6 502 aa11.59□□□□□ -0.55
SS18-221ENST00000582448 FOXD3Q9UJU5 478 aaPredicted RBP11.59□□□□□ -0.55
SS18-221ENST00000582448 COG5Q9UP83 839 aa11.59□□□□□ -0.55
SS18-221ENST00000582448 H3BRB1 525 aa11.58□□□□□ -0.56
SS18-221ENST00000582448 TNFRSF21O75509 655 aa11.58□□□□□ -0.56
SS18-221ENST00000582448 SMNDC1O75940 238 aaKnown RBP eCLIP11.58□□□□□ -0.56
SS18-221ENST00000582448 LETM1O95202 739 aaPredicted RBP11.58□□□□□ -0.56
SS18-221ENST00000582448 PARP1P09874 1014 aaKnown RBP11.58□□□□□ -0.56
SS18-221ENST00000582448 IQCF3P0C7M6 154 aa11.58□□□□□ -0.56
SS18-221ENST00000582448 CALML3P27482 149 aa11.58□□□□□ -0.56
SS18-221ENST00000582448 SLC16A2P36021 539 aa11.58□□□□□ -0.56
SS18-221ENST00000582448 CPT1AP50416 773 aa11.58□□□□□ -0.56
SS18-221ENST00000582448 PURAQ00577 322 aaKnown RBP11.58□□□□□ -0.56
SS18-221ENST00000582448 NRG1Q02297 640 aaPredicted RBP11.58□□□□□ -0.56
SS18-221ENST00000582448 TAP1Q03518 808 aa11.58□□□□□ -0.56
SS18-221ENST00000582448 GRM4Q14833 912 aa11.58□□□□□ -0.56
SS18-221ENST00000582448 SF3A1Q15459 793 aaKnown RBP11.58□□□□□ -0.56
SS18-221ENST00000582448 NKAPLQ5M9Q1 402 aa11.58□□□□□ -0.56
SS18-221ENST00000582448 TTBK2Q6IQ55 1244 aa11.58□□□□□ -0.56
SS18-221ENST00000582448 CAVIN1Q6NZI2 390 aaKnown RBP11.58□□□□□ -0.56
SS18-221ENST00000582448 GJD3Q8N144 294 aa11.58□□□□□ -0.56
SS18-221ENST00000582448 SLC9A7Q96T83 725 aa11.58□□□□□ -0.56
SS18-221ENST00000582448 POP1Q99575 1024 aaKnown RBP11.58□□□□□ -0.56
SS18-221ENST00000582448 TMEM47Q9BQJ4 181 aa11.58□□□□□ -0.56
SS18-221ENST00000582448 MTG1Q9BT17 334 aaPredicted RBP11.58□□□□□ -0.56
SS18-221ENST00000582448 TUT1Q9H6E5 874 aaKnown RBP11.58□□□□□ -0.56
SS18-221ENST00000582448 SYNPO2Q9UMS6 1093 aa11.58□□□□□ -0.56
SS18-221ENST00000582448 PLIN4Q96Q06 1357 aa11.57□□□□□ -0.56
SS18-221ENST00000582448 GOLGA6L3A6NEY3 463 aa11.57□□□□□ -0.56
SS18-221ENST00000582448 LINC01387J3KSC0 135 aa11.57□□□□□ -0.56
SS18-221ENST00000582448 EREGO14944 169 aa11.57□□□□□ -0.56
SS18-221ENST00000582448 ALDH5A1P51649 535 aaPredicted RBP11.57□□□□□ -0.56
SS18-221ENST00000582448 GRB10Q13322 594 aa11.57□□□□□ -0.56
SS18-221ENST00000582448 BRDTQ58F21 947 aaPredicted RBP11.57□□□□□ -0.56
SS18-221ENST00000582448 L1TD1Q5T7N2 865 aaKnown RBP11.57□□□□□ -0.56
SS18-221ENST00000582448 FAM173BQ6P4H8 233 aa11.57□□□□□ -0.56
SS18-221ENST00000582448 IGF2-ASQ6U949 168 aa11.57□□□□□ -0.56
SS18-221ENST00000582448 SPRED2Q7Z698 418 aa11.57□□□□□ -0.56
SS18-221ENST00000582448 TMCO2Q7Z6W1 182 aaPredicted RBP11.57□□□□□ -0.56
SS18-221ENST00000582448 HERC6Q8IVU3 1022 aa11.57□□□□□ -0.56
SS18-221ENST00000582448 PHOSPHO2Q8TCD6 241 aa11.57□□□□□ -0.56
SS18-221ENST00000582448 LEO1Q8WVC0 666 aaPredicted RBP11.57□□□□□ -0.56
SS18-221ENST00000582448 COPS5Q92905 334 aa11.57□□□□□ -0.56
SS18-221ENST00000582448 CHAMP1Q96JM3 812 aa11.57□□□□□ -0.56
SS18-221ENST00000582448 ADD3Q9UEY8 706 aaKnown RBP11.57□□□□□ -0.56
SS18-221ENST00000582448 PPME1Q9Y570 386 aa11.57□□□□□ -0.56
SS18-221ENST00000582448 GBF1Q92538 1859 aa11.57□□□□□ -0.56
SS18-221ENST00000582448 MYH4Q9Y623 1939 aa11.56□□□□□ -0.56
SS18-221ENST00000582448 NFIBO00712 420 aa11.56□□□□□ -0.56
SS18-221ENST00000582448 PLEKHA8P1O95397 391 aa11.56□□□□□ -0.56
SS18-221ENST00000582448 MMP1P03956 469 aa11.56□□□□□ -0.56
SS18-221ENST00000582448 ICAM1P05362 532 aa11.56□□□□□ -0.56
SS18-221ENST00000582448 POU3F3P20264 500 aaPredicted RBP11.56□□□□□ -0.56
SS18-221ENST00000582448 KCNJ6P48051 423 aa11.56□□□□□ -0.56
SS18-221ENST00000582448 CEBPZQ03701 1054 aaKnown RBP11.56□□□□□ -0.56
SS18-221ENST00000582448 STK38Q15208 465 aa11.56□□□□□ -0.56
SS18-221ENST00000582448 TXNDC11Q6PKC3 985 aa11.56□□□□□ -0.56
SS18-221ENST00000582448 FAM177A1Q8N128 213 aaPredicted RBP11.56□□□□□ -0.56
SS18-221ENST00000582448 BICD2Q8TD16 824 aa11.56□□□□□ -0.56
SS18-221ENST00000582448 GPT2Q8TD30 523 aa11.56□□□□□ -0.56
SS18-221ENST00000582448 KCNG4Q8TDN1 519 aa11.56□□□□□ -0.56
SS18-221ENST00000582448 CCDC12Q8WUD4 166 aaPredicted RBP11.56□□□□□ -0.56
SS18-221ENST00000582448 HHIPQ96QV1 700 aa11.56□□□□□ -0.56
SS18-221ENST00000582448 FOXP1Q9H334 677 aaPredicted RBP11.56□□□□□ -0.56
SS18-221ENST00000582448 SEC63Q9UGP8 760 aaKnown RBP11.56□□□□□ -0.56
SS18-221ENST00000582448 MTUS1Q9ULD2 1270 aa11.56□□□□□ -0.56
SS18-221ENST00000582448 FRMPD2Q68DX3 1309 aaPredicted RBP11.56□□□□□ -0.56
SS18-221ENST00000582448 PRRC2BQ5JSZ5 2229 aaKnown RBP11.55□□□□□ -0.56
SS18-221ENST00000582448 GREB1LQ9C091 1923 aaPredicted RBP11.55□□□□□ -0.56
SS18-221ENST00000582448 LOC100996750A0A140TA64 210 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 KLRF2D3W0D1 207 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 RBAK-RBAKDNI3L0D1 243 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 PLA2G6O60733 806 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 GADD45BO75293 160 aaPredicted RBP11.55□□□□□ -0.56
SS18-221ENST00000582448 YEATS4O95619 227 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 SCG2P13521 617 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 U2AF2P26368 475 aaKnown RBP eCLIP11.55□□□□□ -0.561e-7■■■□□ 18.2
SS18-221ENST00000582448 SMARCA1P28370 1054 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 CDC25BP30305 580 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 RFC2P35250 354 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 KRT2P35908 639 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 ME1P48163 572 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 ARHGAP4P98171 946 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 BFSP2Q13515 415 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 ASPRV1Q53RT3 343 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 RILPL1Q5EBL4 403 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 NOSTRINQ8IVI9 506 aa11.55□□□□□ -0.56
SS18-221ENST00000582448 DIS3L2Q8IYB7 885 aaKnown RBP11.55□□□□□ -0.56
SS18-221ENST00000582448 CACTIN-AS1Q8N1I8 211 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms