RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 SLC25A27O95847 323 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 OATP04181 439 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 CCDC172P0C7W6 258 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 ZBTB48P10074 688 aaPredicted RBP10.66□□□□□ -0.7
USP39-214ENST00000474572 UBA1P22314 1058 aaKnown RBP10.66□□□□□ -0.7
USP39-214ENST00000474572 MCM3P25205 808 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 CNGA1P29973 690 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 PLA2G4AP47712 749 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 MXI1P50539 228 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 VSNL1P62760 191 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 ARID5AQ03989 594 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 FSTL1Q12841 308 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 TCEAL1Q15170 157 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 PWP2Q15269 919 aaKnown RBP10.66□□□□□ -0.7
USP39-214ENST00000474572 TARBP2Q15633 366 aaKnown RBP10.66□□□□□ -0.7
USP39-214ENST00000474572 IFI16Q16666 785 aaKnown RBP10.66□□□□□ -0.7
USP39-214ENST00000474572 LONRF2Q1L5Z9 754 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 BRDTQ58F21 947 aaPredicted RBP10.66□□□□□ -0.7
USP39-214ENST00000474572 DLK2Q6UY11 383 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 SLFN11Q7Z7L1 901 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 ANKRD35Q8N283 1001 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 ANKRD13CQ8N6S4 541 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 LRRC57Q8N9N7 239 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 MORC4Q8TE76 937 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 PARD3BQ8TEW8 1205 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 ZNF526Q8TF50 670 aaPredicted RBP10.66□□□□□ -0.7
USP39-214ENST00000474572 COG1Q8WTW3 980 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 FGD4Q96M96 766 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.66□□□□□ -0.7
USP39-214ENST00000474572 TMEM117Q9H0C3 514 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 ASCC2Q9H1I8 757 aaPredicted RBP10.66□□□□□ -0.7
USP39-214ENST00000474572 ELP3Q9H9T3 547 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 ZNF302Q9NR11 478 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 SEPT9Q9UHD8 586 aaPredicted RBP10.66□□□□□ -0.7
USP39-214ENST00000474572 STYXL1Q9Y6J8 313 aa10.66□□□□□ -0.7
USP39-214ENST00000474572 ZC3H4Q9UPT8 1303 aaKnown RBP10.65□□□□□ -0.7
USP39-214ENST00000474572 DNAJC25-GNG10A0A024R161 153 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 GSTTP1A0A1W2PQM5 241 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 CCDC169A6NNP5 214 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 KIAA0391O15091 583 aaKnown RBP10.65□□□□□ -0.7
USP39-214ENST00000474572 ERLIN1O75477 346 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 H2AFZP0C0S5 128 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 TMEM253P0C7T8 217 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 TGFB3P10600 412 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 YBX3P16989 372 aaKnown RBP eCLIP10.65□□□□□ -0.7
USP39-214ENST00000474572 GTF2H1P32780 548 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 NF2P35240 595 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 ARL2P36404 184 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 NAMPTP43490 491 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 HADHBP55084 474 aaKnown RBP10.65□□□□□ -0.7
USP39-214ENST00000474572 CBX1P83916 185 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 CETN1Q12798 172 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 SNRNP35Q16560 246 aaKnown RBP10.65□□□□□ -0.7
USP39-214ENST00000474572 C9orf131Q5VYM1 1079 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 NFRKBQ6P4R8 1299 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 GADL1Q6ZQY3 521 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 H2AFVQ71UI9 128 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 CBWD2Q8IUF1 395 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 ARHGEF19Q8IW93 802 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 RDH13Q8NBN7 331 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 ZSWIM2Q8NEG5 633 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 SPATA4Q8NEY3 305 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 CAPZA3Q96KX2 299 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 PCYT2Q99447 389 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 POLR3FQ9H1D9 316 aaPredicted RBP10.65□□□□□ -0.7
USP39-214ENST00000474572 PORCNQ9H237 461 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 TMEM8AQ9HCN3 771 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 L1RE1Q9UN81 338 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 STXBP5LQ9Y2K9 1186 aa10.65□□□□□ -0.7
USP39-214ENST00000474572 PLXNA1Q9UIW2 1896 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 PLXNB2O15031 1838 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 LRRIQ3A6PVS8 624 aaPredicted RBP10.64□□□□□ -0.71
USP39-214ENST00000474572 SOCS7O14512 581 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 NCK2O43639 380 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 RHOXF2BP0C7M4 288 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 RFC5P40937 340 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 GPC3P51654 580 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 CLDN10P78369 228 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 IRX3P78415 501 aaPredicted RBP10.64□□□□□ -0.71
USP39-214ENST00000474572 CYP24A1Q07973 514 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 NEDD9Q14511 834 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 EMC2Q15006 297 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 MTERF2Q49AM1 385 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 LDLRAD1Q5T700 205 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 KRT39Q6A163 491 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 GPAT2Q6NUI2 795 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 METTL7BQ6UX53 244 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 C15orf39Q6ZRI6 1047 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 CYFIP1Q7L576 1253 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 GPD1LQ8N335 351 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 TPCN2Q8NHX9 752 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 OTUD5Q96G74 571 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 CLMNQ96JQ2 1002 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 CALR3Q96L12 384 aaKnown RBP10.64□□□□□ -0.71
USP39-214ENST00000474572 IFT74Q96LB3 600 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 ARID3AQ99856 593 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 RHOXF2Q9BQY4 288 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 SYT17Q9BSW7 474 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 KIFC3Q9BVG8 833 aa10.64□□□□□ -0.71
USP39-214ENST00000474572 ABCB6Q9NP58 842 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms