RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 RESTQ13127 1097 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 TRADDQ15628 312 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 RARS2Q5T160 578 aaKnown RBP13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 PADI6Q6TGC4 694 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 ZNF579Q8NAF0 562 aaKnown RBP13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 FAM213AQ9BRX8 229 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 HEMGNQ9BXL5 484 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 CCDC22O60826 627 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 AP3M2P53677 418 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 NME3Q13232 169 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 MASTLQ96GX5 879 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 KHDRBS2Q5VWX1 349 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 LRRC8BQ6P9F7 803 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 ZNF467Q7Z7K2 595 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 SNX24Q9Y343 169 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 CFAP69A5D8W1 941 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 KRT87PA6NCN2 255 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 CHRNA3P32297 505 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 GPS1Q13098 491 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 YAF2Q8IY57 180 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 ZFYVE19Q96K21 471 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 AFF4Q9UHB7 1163 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 AATKQ6ZMQ8 1374 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 STK36Q9NRP7 1315 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 UBA6A0AVT1 1052 aaPredicted RBP13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 PSMC1P62191 440 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 DGKHQ86XP1 1220 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 THOC1Q96FV9 657 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 TGS1Q96RS0 853 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 SETD1BQ9UPS6 1966 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 LGALS16A8MUM7 142 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 MRPL28Q13084 256 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 DYNC1I2Q13409 638 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 VEPH1Q14D04 833 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 AARS2Q5JTZ9 985 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 THEMIS2Q5TEJ8 643 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 DCUN1D1Q96GG9 259 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 FAM20AQ96MK3 541 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 CLCA2Q9UQC9 943 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 ZBTB1Q9Y2K1 713 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 ADGRL2O95490 1459 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 APOL1O14791 398 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 FAM83BQ5T0W9 1011 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 LRRC8EQ6NSJ5 796 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 MMS22LQ6ZRQ5 1243 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 RHPN2Q8IUC4 686 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 PPHLN1Q8NEY8 458 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 SENP1Q9P0U3 644 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 SHROOM2Q13796 1616 aa13.57□□□□□ -0.24
CCDC88C-204ENST00000389857 ABCE1P61221 599 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 CCDC85BQ15834 202 aaPredicted RBP13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 TTLL6Q8N841 843 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 ATP11CQ8NB49 1132 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 B4GALNT2Q8NHY0 566 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 MMP19Q99542 508 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 RUBCNLQ9H714 662 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 APOA1P02647 267 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 ARFIP2P53365 341 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 PPM1NQ8N819 430 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 PHF21AQ96BD5 680 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 PARVAQ9NVD7 372 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 EIF3DO15371 548 aaKnown RBP eCLIP13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 PSMD3O43242 534 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 PPP2R2AP63151 447 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 GTF2H3Q13889 308 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 MFN1Q8IWA4 741 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 NSUN6Q8TEA1 469 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 ANTXR1Q9H6X2 564 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 SLC4A7Q9Y6M7 1214 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 ANKARQ7Z5J8 1434 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 COPB2P35606 906 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 SKOR1P84550 965 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 DFFAO00273 331 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 MYCP01106 439 aaPredicted RBP13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 GH2P01242 217 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 ZNF555Q8NEP9 628 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 ASAP3Q8TDY4 903 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 OSBP2Q969R2 916 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 COPG1Q9Y678 874 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 MAP4P27816 1152 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 GCLMP48507 274 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 ZNF235Q14590 738 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 FASTKD1Q53R41 847 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 MFSD14CQ5VZR4 134 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 SFR1Q86XK3 245 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 CATSPER3Q86XQ3 398 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 ECT2Q9H8V3 914 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 BFARQ9NZS9 450 aa13.56□□□□□ -0.24
CCDC88C-204ENST00000389857 SAMD9Q5K651 1589 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 SERPINI2O75830 405 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 COASYQ13057 564 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 KNOP1Q1ED39 458 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 SCFD1Q8WVM8 642 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 GRAMD1AQ96CP6 724 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 SLC9A2Q9UBY0 812 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 FAM187AA6NFU0 413 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 KCNA2P16389 499 aa13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 MAGOHP61326 146 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-204ENST00000389857 PROSER3Q2NL68 480 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms