RNA–Protein interactions for RNA: YHR170W

NMD3, Transcript of Protein involved in nuclear export of the large ribosomal subunit, yeast

Gene NMD3, Length 1,557 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NMD3	YHR170W	MRPL6	P32904	214 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	OAR1	P35731	278 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	DAD2	P36162	133 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	ECM8	P38246	354 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	BIG1	P38813	335 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	AVT6	P40074	448 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	PIG2	P40187	538 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	YGR201C	P42936	225 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	FAR7	P43592	221 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	YDL183C	P48569	320 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	SED5	Q01590	340 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	FDC1	Q03034	503 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	KRE28	Q04431	385 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	YMR310C	Q04867	317 aa	Predicted RBP	4.19	□□□□□ -1.74
NMD3	YHR170W	BNA5	Q05979	453 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	YOR019W	Q99248	730 aa		4.19	□□□□□ -1.74
NMD3	YHR170W	PRP2	P20095	876 aa	Predicted RBP	4.18	□□□□□ -1.74
NMD3	YHR170W	FAR1	P21268	830 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	CNA1	P23287	553 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	YCR006C	P25350	157 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	SSE2	P32590	693 aa	Known RBP	4.18	□□□□□ -1.74
NMD3	YHR170W	NUF2	P33895	451 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	HCS1	P34243	683 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	DOA1	P36037	715 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	SPO73	P40031	143 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	PRE6	P40303	254 aa	Known RBP	4.18	□□□□□ -1.74
NMD3	YHR170W	MET28	P40573	187 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	HMS2	P47175	358 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	AAD10	P47182	288 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	SMX3	P54999	86 aa	Predicted RBP	4.18	□□□□□ -1.74
NMD3	YHR170W	CTL1	Q03220	320 aa	Known RBP	4.18	□□□□□ -1.74
NMD3	YHR170W	RSN1	Q03516	953 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	RIM13	Q03792	727 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	YDR179W-A	Q03983	463 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	RTC5	Q12108	567 aa	Known RBP	4.18	□□□□□ -1.74
NMD3	YHR170W	USV1	Q12132	391 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	LEU9	Q12166	604 aa	Known RBP	4.18	□□□□□ -1.74
NMD3	YHR170W	ERG27	Q12452	347 aa	Known RBP	4.18	□□□□□ -1.74
NMD3	YHR170W	MRX4	Q12467	430 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	ISN1	Q99312	450 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	VCX1	Q99385	411 aa		4.18	□□□□□ -1.74
NMD3	YHR170W	RPB5	P20434	215 aa		4.17	□□□□□ -1.74
NMD3	YHR170W	DBP3	P20447	523 aa	Known RBP	4.17	□□□□□ -1.74
NMD3	YHR170W	YJU2	P28320	278 aa	Predicted RBP	4.17	□□□□□ -1.74
NMD3	YHR170W	YMC1	P32331	307 aa		4.17	□□□□□ -1.74
NMD3	YHR170W	SRB5	P32585	307 aa		4.17	□□□□□ -1.74
NMD3	YHR170W	LHS1	P36016	881 aa		4.17	□□□□□ -1.74
NMD3	YHR170W	ADH5	P38113	351 aa	Known RBP	4.17	□□□□□ -1.74
NMD3	YHR170W	EGD2	P38879	174 aa	Known RBP	4.17	□□□□□ -1.74
NMD3	YHR170W	BFR1	P38934	470 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	RIP-Chip
NMD3	YHR170W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
NMD3	YHR170W	TRM9	P49957	279 aa		4.17	□□□□□ -1.74
NMD3	YHR170W	TOS2	P50078	622 aa		4.17	□□□□□ -1.74
NMD3	YHR170W	TWF1	P53250	332 aa		4.17	□□□□□ -1.74
NMD3	YHR170W	NGL2	Q03264	515 aa	Known RBP	4.17	□□□□□ -1.74
NMD3	YHR170W	INP1	Q03694	420 aa		4.17	□□□□□ -1.74
NMD3	YHR170W	NAT4	Q04751	285 aa		4.17	□□□□□ -1.74
NMD3	YHR170W	RNH202	Q05635	350 aa		4.17	□□□□□ -1.74
NMD3	YHR170W	ARO10	Q06408	635 aa		4.17	□□□□□ -1.74
NMD3	YHR170W	YPL119C-A	Q3E751	87 aa		4.17	□□□□□ -1.74
NMD3	YHR170W	MHF1	Q3E835	90 aa		4.17	□□□□□ -1.74
NMD3	YHR170W	RIB3	Q99258	208 aa		4.17	□□□□□ -1.74
NMD3	YHR170W	TPK3	P05986	398 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	HNM1	P19807	563 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	MCK1	P21965	375 aa	Known RBP	4.16	□□□□□ -1.74
NMD3	YHR170W	IMG1	P25626	169 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	VPH2	P32341	215 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	MSN2	P33748	704 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	RPS27A	P35997	82 aa	Known RBP	4.16	□□□□□ -1.74
NMD3	YHR170W	RPS27B	P38711	82 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	ECM34	P38728	170 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	SOK1	P40317	901 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	UTP25	P40498	721 aa	Known RBP	4.16	□□□□□ -1.74
NMD3	YHR170W	MSS2	P40990	351 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	HOC1	P47124	396 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	SHE4	P51534	789 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	TPC1	P53257	314 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	ATG4	P53867	494 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	INN1	P53901	409 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	TMA20	P89886	181 aa	Predicted RBP	4.16	□□□□□ -1.74
NMD3	YHR170W	YPL108W	Q02872	168 aa	Predicted RBP	4.16	□□□□□ -1.74
NMD3	YHR170W	YDR541C	Q03049	344 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	ATG17	Q06410	417 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	AIM6	Q07716	390 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	YEH1	Q07804	573 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	IZH3	Q07959	543 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	BSC6	Q08280	497 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	FDH1	Q08911	376 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	SFM1	Q12314	213 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	YJR112W-A	Q3E743	109 aa		4.16	□□□□□ -1.74
NMD3	YHR170W	GAL4	P04386	881 aa		4.15	□□□□□ -1.74
NMD3	YHR170W	KSS1	P14681	368 aa		4.15	□□□□□ -1.74
NMD3	YHR170W	PRE2	P30656	287 aa	Known RBP	4.15	□□□□□ -1.74
NMD3	YHR170W	ARC19	P33204	171 aa	Known RBP	4.15	□□□□□ -1.74
NMD3	YHR170W	SOP4	P39543	234 aa	Predicted RBP	4.15	□□□□□ -1.74
NMD3	YHR170W	PRP39	P39682	629 aa	Known RBP	4.15	□□□□□ -1.74
NMD3	YHR170W	AST2	P39945	430 aa	Known RBP	4.15	□□□□□ -1.74
NMD3	YHR170W	SLZ1	P40167	298 aa		4.15	□□□□□ -1.74
NMD3	YHR170W	YIL152W	P40455	235 aa		4.15	□□□□□ -1.74
NMD3	YHR170W	BPL1	P48445	690 aa	Predicted RBP	4.15	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms