RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W RPL16BP26785 198 aaKnown RBP2.69□□□□□ -1.98
UPF3YGR072W INO2P26798 304 aa2.69□□□□□ -1.98
UPF3YGR072W SPR1P32603 445 aa2.69□□□□□ -1.98
UPF3YGR072W IES6P32617 166 aa2.69□□□□□ -1.98
UPF3YGR072W SKG6P32900 734 aaPredicted RBP2.69□□□□□ -1.98
UPF3YGR072W YKL063CP35725 167 aa2.69□□□□□ -1.98
UPF3YGR072W DTR1P38125 572 aa2.69□□□□□ -1.98
UPF3YGR072W EFM1P38732 585 aa2.69□□□□□ -1.98
UPF3YGR072W RCY1P39531 840 aa2.69□□□□□ -1.98
UPF3YGR072W STB1P42845 420 aa2.69□□□□□ -1.98
UPF3YGR072W AGP3P43548 558 aa2.69□□□□□ -1.98
UPF3YGR072W HIT1P46973 164 aa2.69□□□□□ -1.98
UPF3YGR072W CDH1P53197 566 aa2.69□□□□□ -1.98
UPF3YGR072W YGR015CP53208 328 aa2.69□□□□□ -1.98
UPF3YGR072W NRM1P53718 249 aa2.69□□□□□ -1.98
UPF3YGR072W APJ1P53940 528 aa2.69□□□□□ -1.98
UPF3YGR072W KTR6P54070 446 aa2.69□□□□□ -1.98
UPF3YGR072W APC9Q12107 265 aa2.69□□□□□ -1.98
UPF3YGR072W RBD2Q12270 262 aa2.69□□□□□ -1.98
UPF3YGR072W TFC7Q12415 435 aa2.69□□□□□ -1.98
UPF3YGR072W ILV1P00927 576 aaKnown RBP2.68□□□□□ -1.98
UPF3YGR072W YSR3P23501 404 aa2.68□□□□□ -1.98
UPF3YGR072W IFM1P25038 676 aa2.68□□□□□ -1.98
UPF3YGR072W PDC2P32896 925 aa2.68□□□□□ -1.98
UPF3YGR072W SPT8P38915 602 aa2.68□□□□□ -1.98
UPF3YGR072W YIA6P40556 373 aa2.68□□□□□ -1.98
UPF3YGR072W YJR054WP47114 497 aa2.68□□□□□ -1.98
UPF3YGR072W BIO3P50277 480 aa2.68□□□□□ -1.98
UPF3YGR072W VHT1P53241 593 aa2.68□□□□□ -1.98
UPF3YGR072W SPP2Q02521 185 aa2.68□□□□□ -1.98
UPF3YGR072W YDR115WQ04598 105 aa2.68□□□□□ -1.98
UPF3YGR072W FAR10Q06001 478 aa2.68□□□□□ -1.98
UPF3YGR072W ASR1Q06834 288 aa2.68□□□□□ -1.98
UPF3YGR072W YPL245WQ12179 454 aaKnown RBP2.68□□□□□ -1.98
UPF3YGR072W PRP46Q12417 451 aaPredicted RBP2.68□□□□□ -1.98
UPF3YGR072W ATP6P00854 259 aa2.67□□□□□ -1.98
UPF3YGR072W RPS14AP06367 137 aaKnown RBP2.67□□□□□ -1.98
UPF3YGR072W RPL31AP0C2H8 113 aaKnown RBP2.67□□□□□ -1.98
UPF3YGR072W BGL2P15703 313 aaKnown RBP2.67□□□□□ -1.98
UPF3YGR072W HPR1P17629 752 aaKnown RBP2.67□□□□□ -1.98
UPF3YGR072W VPS1P21576 704 aaKnown RBP2.67□□□□□ -1.98
UPF3YGR072W MCH2P36032 473 aa2.67□□□□□ -1.98
UPF3YGR072W SHE1P38200 338 aa2.67□□□□□ -1.98
UPF3YGR072W SHE3P38272 425 aaKnown RBP2.67□□□□□ -1.98
UPF3YGR072W RPS14BP39516 138 aaKnown RBP2.67□□□□□ -1.98
UPF3YGR072W SOP4P39543 234 aaPredicted RBP2.67□□□□□ -1.98
UPF3YGR072W GMC2Q06201 188 aa2.67□□□□□ -1.98
UPF3YGR072W SRO7Q12038 1033 aa2.67□□□□□ -1.98
UPF3YGR072W SAL1D6W196 494 aa2.66□□□□□ -1.98
UPF3YGR072W COX4P04037 155 aa2.66□□□□□ -1.98
UPF3YGR072W SPS100P13130 326 aa2.66□□□□□ -1.98
UPF3YGR072W FRS2P15625 503 aaKnown RBP2.66□□□□□ -1.98
UPF3YGR072W COT1P32798 439 aa2.66□□□□□ -1.98
UPF3YGR072W RPC37P36121 282 aa2.66□□□□□ -1.98
UPF3YGR072W CHL4P38907 458 aa2.66□□□□□ -1.98
UPF3YGR072W HEM14P40012 539 aa2.66□□□□□ -1.98
UPF3YGR072W KAP114P53067 1004 aa2.66□□□□□ -1.98
UPF3YGR072W YGL039WP53183 348 aaKnown RBP2.66□□□□□ -1.98
UPF3YGR072W MCH1Q07376 486 aa2.66□□□□□ -1.98
UPF3YGR072W YLL007CQ07799 665 aa2.66□□□□□ -1.98
UPF3YGR072W YPR064WQ12492 139 aa2.66□□□□□ -1.98
UPF3YGR072W SSK22P25390 1331 aaPredicted RBP2.66□□□□□ -1.98
UPF3YGR072W TDH3P00359 332 aaKnown RBP RIP-Chip data2.65□□□□□ -1.99not detected
UPF3YGR072W TDH1P00360 332 aaKnown RBP2.65□□□□□ -1.99
UPF3YGR072W GCG1P32656 232 aaKnown RBP2.65□□□□□ -1.99
UPF3YGR072W CBF5P33322 483 aaKnown RBP RIP-Chip data2.65□□□□□ -1.99not detected
UPF3YGR072W FMP33P46998 180 aa2.65□□□□□ -1.99
UPF3YGR072W UBC13P52490 153 aa2.65□□□□□ -1.99
UPF3YGR072W RPL21AQ02753 160 aaKnown RBP2.65□□□□□ -1.99
UPF3YGR072W MRX11Q03079 207 aa2.65□□□□□ -1.99
UPF3YGR072W YLR446WQ06204 433 aa2.65□□□□□ -1.99
UPF3YGR072W RRT8Q08219 342 aa2.65□□□□□ -1.99
UPF3YGR072W VIK1Q12045 647 aa2.65□□□□□ -1.99
UPF3YGR072W BTS1Q12051 335 aa2.65□□□□□ -1.99
UPF3YGR072W POM33Q12164 279 aa2.65□□□□□ -1.99
UPF3YGR072W MED4Q12343 284 aa2.65□□□□□ -1.99
UPF3YGR072W LAG2Q92325 660 aa2.65□□□□□ -1.99
UPF3YGR072W BI3Q9ZZW7 517 aa2.65□□□□□ -1.99
UPF3YGR072W RSR1P13856 272 aa2.64□□□□□ -1.99
UPF3YGR072W TFS1P14306 219 aa2.64□□□□□ -1.99
UPF3YGR072W EPT1P22140 391 aa2.64□□□□□ -1.99
UPF3YGR072W MRPL20P22354 195 aaPredicted RBP2.64□□□□□ -1.99
UPF3YGR072W YKL187CP34231 750 aa2.64□□□□□ -1.99
UPF3YGR072W TPO5P36029 618 aa2.64□□□□□ -1.99
UPF3YGR072W GGC1P38988 300 aa2.64□□□□□ -1.99
UPF3YGR072W SHQ1P40486 507 aaPredicted RBP2.64□□□□□ -1.99
UPF3YGR072W YPS5P53057 165 aa2.64□□□□□ -1.99
UPF3YGR072W VEL1P53058 206 aa2.64□□□□□ -1.99
UPF3YGR072W CPD1P53314 239 aa2.64□□□□□ -1.99
UPF3YGR072W TPS1Q00764 495 aaKnown RBP2.64□□□□□ -1.99
UPF3YGR072W RMI1Q02685 241 aa2.64□□□□□ -1.99
UPF3YGR072W MHR1Q06630 226 aa2.64□□□□□ -1.99
UPF3YGR072W TMC1Q08422 150 aaPredicted RBP2.64□□□□□ -1.99
UPF3YGR072W MMT2Q08970 484 aa2.64□□□□□ -1.99
UPF3YGR072W PSK1P31374 1356 aa2.63□□□□□ -1.99
UPF3YGR072W MRP1P10662 321 aaKnown RBP2.63□□□□□ -1.99
UPF3YGR072W SPS19P32573 292 aaKnown RBP2.63□□□□□ -1.99
UPF3YGR072W RCK1P38622 512 aa2.63□□□□□ -1.99
UPF3YGR072W LIA1P47120 325 aaKnown RBP2.63□□□□□ -1.99
UPF3YGR072W YGL262WP53054 175 aa2.63□□□□□ -1.99
Retrieved 100 of 5,963 RNA–protein pairs in 60.2 ms