RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CEP112Q8N8E3 955 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 SEPT8Q92599 483 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 CAPZA3Q96KX2 299 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 CCDC114Q96M63 670 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 PPME1Q9Y570 386 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 PABPN1LA6NDY0 278 aaKnown RBP10.61□□□□□ -0.71
LIG3-216ENST00000593099 FOXN1O15353 648 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 PRKAR2AP13861 404 aaKnown RBP10.61□□□□□ -0.71
LIG3-216ENST00000593099 KRT31Q15323 416 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 TAF2Q6P1X5 1199 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 TMCO3Q6UWJ1 677 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 CYP2W1Q8TAV3 490 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 C12orf42Q96LP6 360 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 MYCBPQ99417 103 aaPredicted RBP10.61□□□□□ -0.71
LIG3-216ENST00000593099 IFT122Q9HBG6 1241 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 KDM3BQ7LBC6 1761 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 BAZ2BQ9UIF8 2168 aaKnown RBP10.61□□□□□ -0.71
LIG3-216ENST00000593099 MED24O75448 989 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 GFPT2O94808 682 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 GAS8O95995 478 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 PSEN2P49810 448 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 RPS6KA1Q15418 735 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 PPP1R7Q15435 360 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 DLK2Q6UY11 383 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 ILDR2Q71H61 639 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 OTUD6BQ8N6M0 293 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 SENP7Q9BQF6 1050 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 SLC38A7Q9NVC3 462 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 SETD4Q9NVD3 440 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 POLIQ9UNA4 740 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 IKBKGQ9Y6K9 419 aa10.61□□□□□ -0.71
LIG3-216ENST00000593099 FAM170AA1A519 330 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 TYW5A2RUC4 315 aaKnown RBP10.6□□□□□ -0.71
LIG3-216ENST00000593099 FAM86B1E9PN63 330 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 FAM86B2P0C5J1 330 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 TBXAS1P24557 533 aaPredicted RBP10.6□□□□□ -0.71
LIG3-216ENST00000593099 CASP14P31944 242 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 APLP1P51693 650 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 KCNH2Q12809 1159 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 MFSD10Q14728 455 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 RINT1Q6NUQ1 792 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 FAM204AQ9H8W3 233 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 AMFRQ9UKV5 643 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 COL18A1P39060 1754 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 PQBP1O60828 265 aaKnown RBP10.6□□□□□ -0.71
LIG3-216ENST00000593099 HIRAP54198 1017 aaPredicted RBP10.6□□□□□ -0.71
LIG3-216ENST00000593099 PDZD4Q76G19 769 aaPredicted RBP10.6□□□□□ -0.71
LIG3-216ENST00000593099 METTL16Q86W50 562 aaKnown RBP10.6□□□□□ -0.71
LIG3-216ENST00000593099 TRIM50Q86XT4 487 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 ELMOD1Q8N336 334 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 CD99L2Q8TCZ2 262 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 RNF139Q8WU17 664 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 PRPF31Q8WWY3 499 aaKnown RBP10.6□□□□□ -0.71
LIG3-216ENST00000593099 SLC5A5Q92911 643 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 HSPBP1Q9NZL4 362 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 NR2E3Q9Y5X4 410 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 MYO1FO00160 1098 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 RHOBTB3O94955 611 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 SNHG28P0DPA3 235 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 PRMT2P55345 433 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 SNRPFP62306 86 aaKnown RBP10.6□□□□□ -0.71
LIG3-216ENST00000593099 KRT81Q14533 505 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 GRIK4Q16099 956 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 CCDC144BQ3MJ40 725 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 SCN4BQ8IWT1 228 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.6□□□□□ -0.71
LIG3-216ENST00000593099 TARS2Q9BW92 718 aaKnown RBP10.6□□□□□ -0.71
LIG3-216ENST00000593099 SLITRK6Q9H5Y7 841 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 DNAJC18Q9H819 358 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 SLC12A6Q9UHW9 1150 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.6□□□□□ -0.71
LIG3-216ENST00000593099 UBE4BO95155 1302 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 SYNGAP1Q96PV0 1343 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 TADA2AO75478 443 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 HMGCRP04035 888 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 UBA1P22314 1058 aaKnown RBP10.6□□□□□ -0.71
LIG3-216ENST00000593099 GRK4P32298 578 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 ZBED6P86452 979 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 GRB10Q13322 594 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 PRAMEF19Q5SWL8 479 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 REPS2Q8NFH8 660 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 NAPGQ99747 312 aaPredicted RBP10.6□□□□□ -0.71
LIG3-216ENST00000593099 SSX2IPQ9Y2D8 614 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 PCDHB7Q9Y5E2 793 aa10.6□□□□□ -0.71
LIG3-216ENST00000593099 SYNJ2BP-COX16A0A087WUM0 186 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 NAMPTP43490 491 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 ACOT2P49753 483 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 TOB1P50616 345 aaPredicted RBP10.59□□□□□ -0.71
LIG3-216ENST00000593099 RBP5P82980 135 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 PTPAQ15257 358 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 KIZQ2M2Z5 673 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 OR6B2Q6IFH4 312 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 SYT10Q6XYQ8 523 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 TMEM39AQ9NV64 488 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 COX16Q9P0S2 106 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 TSKSQ9UJT2 592 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 DNAJC12Q9UKB3 198 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 EPN1Q9Y6I3 576 aaPredicted RBP10.59□□□□□ -0.71
LIG3-216ENST00000593099 GOLGA8SH3BPF8 625 aa10.59□□□□□ -0.71
LIG3-216ENST00000593099 EIF3DO15371 548 aaKnown RBP eCLIP10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms