RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 GTF2IP78347 998 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 IRX4P78413 519 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 MEI1Q5TIA1 1274 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 TRIM59Q8IWR1 403 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 PROM2Q8N271 834 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 FBXL16Q8N461 479 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 TRIM55Q9BYV6 548 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 USP40Q9NVE5 1235 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 SSX2IPQ9Y2D8 614 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 RASSF9O75901 435 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 PSMC2P35998 433 aaKnown RBP15.23■□□□□ 0.03
LIMS1-215ENST00000544547 TROAPQ12815 778 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 GJB7Q6PEY0 223 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 TMC3Q7Z5M5 1100 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 RAD54LQ92698 747 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 PCDHA6Q9UN73 950 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 PCDHA8Q9Y5H6 950 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 RICTORQ6R327 1708 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 A8MUI8 341 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 SHBGP04278 402 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 CPA2P48052 419 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 RCN1Q15293 331 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 ADGRA1Q86SQ6 560 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 CFAP57Q96MR6 1250 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 TMEM47Q9BQJ4 181 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 PICK1Q9NRD5 415 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 FTLP02792 175 aaPredicted RBP15.22■□□□□ 0.03
LIMS1-215ENST00000544547 ATP4AP20648 1035 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 MMP14P50281 582 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 LIN9Q5TKA1 542 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 SH3RF1Q7Z6J0 888 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 KIAA0825Q8IV33 1275 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 NKX2-3Q8TAU0 364 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 RFFLQ8WZ73 363 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 FAM118BQ9BPY3 351 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 POTEB3A0JP26 581 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 POTECB2RU33 542 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 KITP10721 976 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 TMED8Q6PL24 325 aaPredicted RBP15.22■□□□□ 0.03
LIMS1-215ENST00000544547 POTEBQ6S5H4 581 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 CCDC124Q96CT7 223 aaKnown RBP15.22■□□□□ 0.03
LIMS1-215ENST00000544547 CNOT8Q9UFF9 292 aaKnown RBP15.22■□□□□ 0.03
LIMS1-215ENST00000544547 PNMA3Q9UL41 463 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 C2CD2Q9Y426 696 aa15.22■□□□□ 0.03
LIMS1-215ENST00000544547 WTIPA6NIX2 430 aaPredicted RBP15.21■□□□□ 0.03
LIMS1-215ENST00000544547 CASQ2O14958 399 aaPredicted RBP15.21■□□□□ 0.03
LIMS1-215ENST00000544547 DRD4P21917 467 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 YWHAGP61981 247 aaKnown RBP eCLIP15.21■□□□□ 0.03
LIMS1-215ENST00000544547 PPP2R5CQ13362 524 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 MTM1Q13496 603 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 DHX34Q14147 1143 aaKnown RBP15.21■□□□□ 0.03
LIMS1-215ENST00000544547 HSP90AA5PQ58FG0 334 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 C18orf8Q96DM3 657 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 HIC2Q96JB3 615 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 H0YIN7 160 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 WNT7AO00755 349 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 FOXP2O15409 715 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 DNAJC6O75061 913 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 BFSP1Q12934 665 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 ODR4Q5SWX8 454 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 SFR1Q86XK3 245 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 SMC1BQ8NDV3 1235 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 TPCN2Q8NHX9 752 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 ZNF512BQ96KM6 892 aaPredicted RBP15.21■□□□□ 0.03
LIMS1-215ENST00000544547 C7orf25Q9BPX7 421 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 STK32BQ9NY57 414 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 NAGPAQ9UK23 515 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 SGK1O00141 431 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 CAPN9O14815 690 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 ZNF263O14978 683 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 FLT3P36888 993 aa15.21■□□□□ 0.03
LIMS1-215ENST00000544547 BSDC1Q9NW68 430 aaPredicted RBP15.21■□□□□ 0.03
LIMS1-215ENST00000544547 MARK3P27448 753 aa15.21■□□□□ 0.02
LIMS1-215ENST00000544547 PHBP35232 272 aa15.21■□□□□ 0.02
LIMS1-215ENST00000544547 PGM1P36871 562 aa15.21■□□□□ 0.02
LIMS1-215ENST00000544547 SCNN1DP51172 638 aa15.21■□□□□ 0.02
LIMS1-215ENST00000544547 RCAN1P53805 252 aa15.21■□□□□ 0.02
LIMS1-215ENST00000544547 KRT17Q04695 432 aa15.21■□□□□ 0.02
LIMS1-215ENST00000544547 KCTD1Q719H9 257 aa15.21■□□□□ 0.02
LIMS1-215ENST00000544547 DGKHQ86XP1 1220 aa15.21■□□□□ 0.02
LIMS1-215ENST00000544547 RHOT2Q8IXI1 618 aa15.21■□□□□ 0.02
LIMS1-215ENST00000544547 ZNF507Q8TCN5 953 aa15.21■□□□□ 0.02
LIMS1-215ENST00000544547 BHMT2Q9H2M3 363 aa15.21■□□□□ 0.02
LIMS1-215ENST00000544547 OSGEPQ9NPF4 335 aa15.21■□□□□ 0.02
LIMS1-215ENST00000544547 NDE1Q9NXR1 346 aa15.21■□□□□ 0.02
LIMS1-215ENST00000544547 TCRBV5S4A2TA0A5A2 114 aa15.2■□□□□ 0.02
LIMS1-215ENST00000544547 MT-ND3P03897 115 aa15.2■□□□□ 0.02
LIMS1-215ENST00000544547 ARFIP2P53365 341 aa15.2■□□□□ 0.02
LIMS1-215ENST00000544547 CDK17Q00537 523 aa15.2■□□□□ 0.02
LIMS1-215ENST00000544547 KDSRQ06136 332 aa15.2■□□□□ 0.02
LIMS1-215ENST00000544547 LRP10Q7Z4F1 713 aa15.2■□□□□ 0.02
LIMS1-215ENST00000544547 TRIM49P0CI25 452 aa15.2■□□□□ 0.02
LIMS1-215ENST00000544547 TRIM49CP0CI26 452 aa15.2■□□□□ 0.02
LIMS1-215ENST00000544547 PRKG1Q13976 671 aa15.2■□□□□ 0.02
LIMS1-215ENST00000544547 BBS9Q3SYG4 887 aa15.2■□□□□ 0.02
LIMS1-215ENST00000544547 FIGNQ5HY92 759 aa15.2■□□□□ 0.02
LIMS1-215ENST00000544547 RGS9BPQ6ZS82 235 aa15.2■□□□□ 0.02
LIMS1-215ENST00000544547 IRF2BP1Q8IU81 584 aa15.2■□□□□ 0.02
LIMS1-215ENST00000544547 GRAMD1AQ96CP6 724 aa15.2■□□□□ 0.02
LIMS1-215ENST00000544547 RPS6KC1Q96S38 1066 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms