RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 PARD6AQ9NPB6 346 aa6.45□□□□□ -1.38
CD44-230ENST00000528922 TRHDEQ9UKU6 1024 aa6.45□□□□□ -1.38
CD44-230ENST00000528922 USP18Q9UMW8 372 aa6.45□□□□□ -1.38
CD44-230ENST00000528922 WDR97A6NE52 1622 aa6.44□□□□□ -1.38
CD44-230ENST00000528922 FGD6Q6ZV73 1430 aa6.44□□□□□ -1.38
CD44-230ENST00000528922 MAGI1Q96QZ7 1491 aaPredicted RBP6.44□□□□□ -1.38
CD44-230ENST00000528922 ST20-MTHFSA0A0A6YYL1 179 aa6.44□□□□□ -1.38
CD44-230ENST00000528922 B4GALT4O60513 344 aa6.44□□□□□ -1.38
CD44-230ENST00000528922 H2AFYO75367 372 aaKnown RBP6.44□□□□□ -1.38
CD44-230ENST00000528922 KLF1Q13351 362 aaPredicted RBP6.44□□□□□ -1.38
CD44-230ENST00000528922 TBR1Q16650 682 aa6.44□□□□□ -1.38
CD44-230ENST00000528922 UGT8Q16880 541 aa6.44□□□□□ -1.38
CD44-230ENST00000528922 SYDE2Q5VT97 1194 aa6.44□□□□□ -1.38
CD44-230ENST00000528922 MTMR8Q96EF0 704 aa6.44□□□□□ -1.38
CD44-230ENST00000528922 KCTD10Q9H3F6 313 aa6.44□□□□□ -1.38
CD44-230ENST00000528922 USP40Q9NVE5 1235 aa6.44□□□□□ -1.38
CD44-230ENST00000528922 PRSS50Q9UI38 385 aa6.44□□□□□ -1.38
CD44-230ENST00000528922 DNAI1Q9UI46 699 aa6.44□□□□□ -1.38
CD44-230ENST00000528922 EDARQ9UNE0 448 aa6.44□□□□□ -1.38
CD44-230ENST00000528922 PCDHB6Q9Y5E3 794 aa6.44□□□□□ -1.38
CD44-230ENST00000528922 CEP170Q5SW79 1584 aa6.43□□□□□ -1.38
CD44-230ENST00000528922 GABRDO14764 452 aa6.43□□□□□ -1.38
CD44-230ENST00000528922 IARSP41252 1262 aaKnown RBP6.43□□□□□ -1.38
CD44-230ENST00000528922 MRE11P49959 708 aa6.43□□□□□ -1.38
CD44-230ENST00000528922 RALYLQ86SE5 291 aaKnown RBP6.43□□□□□ -1.38
CD44-230ENST00000528922 RTKN2Q8IZC4 609 aa6.43□□□□□ -1.38
CD44-230ENST00000528922 GAB3Q8WWW8 586 aa6.43□□□□□ -1.38
CD44-230ENST00000528922 ASPSCR1Q9BZE9 553 aa6.43□□□□□ -1.38
CD44-230ENST00000528922 POLR3BQ9NW08 1133 aaPredicted RBP6.43□□□□□ -1.38
CD44-230ENST00000528922 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.43□□□□□ -1.38
CD44-230ENST00000528922 DDX56Q9NY93 547 aaKnown RBP6.43□□□□□ -1.38
CD44-230ENST00000528922 INVSQ9Y283 1065 aa6.43□□□□□ -1.38
CD44-230ENST00000528922 SAMD9Q5K651 1589 aa6.43□□□□□ -1.38
CD44-230ENST00000528922 MYOM3Q5VTT5 1437 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 MIA2Q96PC5 1412 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 POLA1P09884 1462 aaPredicted RBP6.42□□□□□ -1.38
CD44-230ENST00000528922 MAFGO15525 162 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 HNRNPLP14866 589 aaKnown RBP eCLIP6.42□□□□□ -1.38
CD44-230ENST00000528922 LGALS4P56470 323 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 PPARAQ07869 468 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 ADAM15Q13444 863 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 FZD5Q13467 585 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.42□□□□□ -1.38
CD44-230ENST00000528922 BORAQ6PGQ7 559 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 GAREM2Q75VX8 874 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 FERMT3Q86UX7 667 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 LGI4Q8N135 537 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 CDYL2Q8N8U2 506 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 PPP1R14CQ8TAE6 165 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 HIST1H2AHQ96KK5 128 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 WDR92Q96MX6 357 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 HIST1H2AJQ99878 128 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 FDXACB1Q9BRP7 624 aaPredicted RBP6.42□□□□□ -1.38
CD44-230ENST00000528922 ADAM7Q9H2U9 754 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 EVLQ9UI08 416 aaPredicted RBP6.42□□□□□ -1.38
CD44-230ENST00000528922 VWA7Q9Y334 891 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 HECW1Q76N89 1606 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 WASHC2AQ641Q2 1341 aa6.42□□□□□ -1.38
CD44-230ENST00000528922 PPRC1Q5VV67 1664 aaKnown RBP6.41□□□□□ -1.38
CD44-230ENST00000528922 CNR2P34972 360 aa6.41□□□□□ -1.38
CD44-230ENST00000528922 MEOX1P50221 254 aa6.41□□□□□ -1.38
CD44-230ENST00000528922 RNF151Q2KHN1 245 aa6.41□□□□□ -1.38
CD44-230ENST00000528922 TOR2AQ5JU69 321 aa6.41□□□□□ -1.38
CD44-230ENST00000528922 AGBL4Q5VU57 503 aa6.41□□□□□ -1.38
CD44-230ENST00000528922 KLHDC10Q6PID8 442 aa6.41□□□□□ -1.38
CD44-230ENST00000528922 KCNK18Q7Z418 384 aa6.41□□□□□ -1.38
CD44-230ENST00000528922 FRMD5Q7Z6J6 570 aa6.41□□□□□ -1.38
CD44-230ENST00000528922 RSAD2Q8WXG1 361 aa6.41□□□□□ -1.38
CD44-230ENST00000528922 QRSL1Q9H0R6 528 aaKnown RBP6.41□□□□□ -1.38
CD44-230ENST00000528922 OR10A2Q9H208 303 aa6.41□□□□□ -1.38
CD44-230ENST00000528922 CCM2LQ9NUG4 571 aaPredicted RBP6.41□□□□□ -1.38
CD44-230ENST00000528922 DPP7Q9UHL4 492 aa6.41□□□□□ -1.38
CD44-230ENST00000528922 SYNPO2Q9UMS6 1093 aa6.41□□□□□ -1.38
CD44-230ENST00000528922 CTDP1Q9Y5B0 961 aaPredicted RBP6.41□□□□□ -1.38
CD44-230ENST00000528922 SLC4A7Q9Y6M7 1214 aa6.41□□□□□ -1.38
CD44-230ENST00000528922 PTPRMP28827 1452 aa6.4□□□□□ -1.38
CD44-230ENST00000528922 ABCA5Q8WWZ7 1642 aa6.4□□□□□ -1.38
CD44-230ENST00000528922 PTPN23Q9H3S7 1636 aa6.4□□□□□ -1.38
CD44-230ENST00000528922 PBRM1Q86U86 1689 aa6.4□□□□□ -1.38
CD44-230ENST00000528922 GCC2Q8IWJ2 1684 aa6.4□□□□□ -1.38
CD44-230ENST00000528922 C2orf78A6NCI8 922 aa6.4□□□□□ -1.39
CD44-230ENST00000528922 PRICKLE3O43900 615 aaPredicted RBP6.4□□□□□ -1.39
CD44-230ENST00000528922 SEC24DO94855 1032 aaPredicted RBP6.4□□□□□ -1.39
CD44-230ENST00000528922 CNOT4O95628 575 aaKnown RBP6.4□□□□□ -1.39
CD44-230ENST00000528922 MT-CO1P00395 513 aa6.4□□□□□ -1.39
CD44-230ENST00000528922 INHBBP09529 407 aa6.4□□□□□ -1.39
CD44-230ENST00000528922 GPR15P49685 360 aa6.4□□□□□ -1.39
CD44-230ENST00000528922 HSPA2P54652 639 aa6.4□□□□□ -1.39
CD44-230ENST00000528922 SRSF2Q01130 221 aaKnown RBP6.4□□□□□ -1.39
CD44-230ENST00000528922 ABCB5Q2M3G0 1257 aa6.4□□□□□ -1.39
CD44-230ENST00000528922 USP30Q70CQ3 517 aa6.4□□□□□ -1.39
CD44-230ENST00000528922 CLEC14AQ86T13 490 aa6.4□□□□□ -1.39
CD44-230ENST00000528922 C1orf162Q8NEQ5 155 aaPredicted RBP6.4□□□□□ -1.39
CD44-230ENST00000528922 OR14C36Q8NHC7 312 aa6.4□□□□□ -1.39
CD44-230ENST00000528922 RAX2Q96IS3 184 aa6.4□□□□□ -1.39
CD44-230ENST00000528922 PTPN18Q99952 460 aa6.4□□□□□ -1.39
CD44-230ENST00000528922 OSBPL6Q9BZF3 934 aa6.4□□□□□ -1.39
CD44-230ENST00000528922 TYW1Q9NV66 732 aaKnown RBP6.4□□□□□ -1.39
CD44-230ENST00000528922 FAM184BQ9ULE4 1060 aa6.4□□□□□ -1.39
CD44-230ENST00000528922 CDY2AQ9Y6F7 541 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms