RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 AEBP2Q6ZN18 517 aaPredicted RBP24.45■■□□□ 1.5
CD44-230ENST00000528922 CHIC1Q5VXU3 224 aa23.99■■□□□ 1.43
CD44-230ENST00000528922 PHF23Q9BUL5 403 aaPredicted RBP21.16■□□□□ 0.98
CD44-230ENST00000528922 SENP3Q9H4L4 574 aaPredicted RBP20.62■□□□□ 0.89
CD44-230ENST00000528922 PLPPR3Q6T4P5 718 aa19.51■□□□□ 0.71
CD44-230ENST00000528922 FOXD1Q16676 465 aa19.19■□□□□ 0.66
CD44-230ENST00000528922 PPP6R1Q9UPN7 881 aa18.63■□□□□ 0.57
CD44-230ENST00000528922 ADRA2BP18089 450 aa18.6■□□□□ 0.57
CD44-230ENST00000528922 PIAS4Q8N2W9 510 aaPredicted RBP18.09■□□□□ 0.49
CD44-230ENST00000528922 MSH5O43196 834 aa17.55■□□□□ 0.4
CD44-230ENST00000528922 PPP4R3CPQ6ZMV5 832 aa17.24■□□□□ 0.35
CD44-230ENST00000528922 KCNA4P22459 653 aa17.06■□□□□ 0.32
CD44-230ENST00000528922 SCAF1Q9H7N4 1312 aaKnown RBP16.93■□□□□ 0.3
CD44-230ENST00000528922 MAPK8IP2Q13387 824 aaPredicted RBP16.86■□□□□ 0.29
CD44-230ENST00000528922 NCBP3Q53F19 620 aaKnown RBP16.78■□□□□ 0.28
CD44-230ENST00000528922 CNKSR2Q8WXI2 1034 aa16.7■□□□□ 0.26
CD44-230ENST00000528922 NPM3O75607 178 aaKnown RBP16.6■□□□□ 0.25
CD44-230ENST00000528922 DMRT2Q9Y5R5 561 aa16.51■□□□□ 0.23
CD44-230ENST00000528922 POTEDQ86YR6 584 aa16.5■□□□□ 0.23
CD44-230ENST00000528922 RNF216Q9NWF9 866 aaPredicted RBP16.34■□□□□ 0.21
CD44-230ENST00000528922 HOXD11P31277 338 aaPredicted RBP16.25■□□□□ 0.19
CD44-230ENST00000528922 SLC4A1APQ9BWU0 796 aaKnown RBP16.23■□□□□ 0.19
CD44-230ENST00000528922 DNAJC5BQ9UF47 199 aa16.08■□□□□ 0.16
CD44-230ENST00000528922 EHMT2Q96KQ7 1210 aa15.98■□□□□ 0.15
CD44-230ENST00000528922 DCAF8L1A6NGE4 600 aa15.77■□□□□ 0.12
CD44-230ENST00000528922 CSRNP3Q8WYN3 585 aa15.76■□□□□ 0.11
CD44-230ENST00000528922 ZBTB22O15209 634 aa15.73■□□□□ 0.11
CD44-230ENST00000528922 SLC4A2P04920 1241 aa15.68■□□□□ 0.1
CD44-230ENST00000528922 FOXD4L1Q9NU39 408 aa15.61■□□□□ 0.09
CD44-230ENST00000528922 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.46■□□□□ 0.07
CD44-230ENST00000528922 MYCNP04198 464 aaPredicted RBP15.29■□□□□ 0.04
CD44-230ENST00000528922 U3KPZ7 1027 aaPredicted RBP15.27■□□□□ 0.04
CD44-230ENST00000528922 RNF39Q9H2S5 420 aa15.1■□□□□ 0.01
CD44-230ENST00000528922 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.04■□□□□ -0
CD44-230ENST00000528922 HNRNPUL2Q1KMD3 747 aaKnown RBP15.04■□□□□ -0
CD44-230ENST00000528922 ATXN8OSP0DMR3 200 aa15.03■□□□□ -0
CD44-230ENST00000528922 SAMD1Q6SPF0 538 aaPredicted RBP15.02■□□□□ -0
CD44-230ENST00000528922 ATF5Q9Y2D1 282 aaPredicted RBP14.96□□□□□ -0.01
CD44-230ENST00000528922 C1QBPQ07021 282 aaKnown RBP14.9□□□□□ -0.02
CD44-230ENST00000528922 APLP2Q06481 763 aa14.81□□□□□ -0.04
CD44-230ENST00000528922 SPINK5Q9NQ38 1064 aaPredicted RBP14.81□□□□□ -0.04
CD44-230ENST00000528922 CAPN15O75808 1086 aa14.69□□□□□ -0.06
CD44-230ENST00000528922 TRHP20396 242 aaPredicted RBP14.67□□□□□ -0.06
CD44-230ENST00000528922 ZNF219Q9P2Y4 722 aaPredicted RBP14.66□□□□□ -0.06
CD44-230ENST00000528922 CACNB1Q02641 598 aaPredicted RBP14.57□□□□□ -0.08
CD44-230ENST00000528922 POLA2Q14181 598 aa14.48□□□□□ -0.09
CD44-230ENST00000528922 ABCB7O75027 752 aa14.45□□□□□ -0.1
CD44-230ENST00000528922 DSG3P32926 999 aa14.43□□□□□ -0.1
CD44-230ENST00000528922 MKRN4PQ13434 485 aaPredicted RBP14.31□□□□□ -0.12
CD44-230ENST00000528922 FBLN2P98095 1184 aa14.21□□□□□ -0.13
CD44-230ENST00000528922 FKBP8Q14318 412 aa14.19□□□□□ -0.14
CD44-230ENST00000528922 ZBTB12Q9Y330 459 aaPredicted RBP14.17□□□□□ -0.14
CD44-230ENST00000528922 SPDYE4A6NLX3 237 aa14.01□□□□□ -0.17
CD44-230ENST00000528922 OSCARQ8IYS5 282 aa13.98□□□□□ -0.17
CD44-230ENST00000528922 SPDYE2BA6NHP3 402 aa13.86□□□□□ -0.19
CD44-230ENST00000528922 SPDYE6P0CI01 402 aa13.86□□□□□ -0.19
CD44-230ENST00000528922 SPDYE2Q495Y8 402 aa13.86□□□□□ -0.19
CD44-230ENST00000528922 ZNF692Q9BU19 519 aaPredicted RBP13.84□□□□□ -0.19
CD44-230ENST00000528922 PROM2Q8N271 834 aa13.83□□□□□ -0.2
CD44-230ENST00000528922 SSUH2Q9Y2M2 353 aa13.79□□□□□ -0.2
CD44-230ENST00000528922 PABPN1Q86U42 306 aaKnown RBP eCLIP13.67□□□□□ -0.22
CD44-230ENST00000528922 RBM42Q9BTD8 480 aaKnown RBP13.67□□□□□ -0.22
CD44-230ENST00000528922 FBXO3Q9UK99 471 aa13.59□□□□□ -0.23
CD44-230ENST00000528922 AKT1S1Q96B36 256 aa13.58□□□□□ -0.24
CD44-230ENST00000528922 REM2Q8IYK8 340 aaPredicted RBP13.48□□□□□ -0.25
CD44-230ENST00000528922 VASPP50552 380 aaPredicted RBP13.45□□□□□ -0.26
CD44-230ENST00000528922 STAG3Q9UJ98 1225 aa13.42□□□□□ -0.26
CD44-230ENST00000528922 SPDYE1Q8NFV5 336 aaPredicted RBP13.39□□□□□ -0.27
CD44-230ENST00000528922 CLEC11AQ9Y240 323 aa13.35□□□□□ -0.27
CD44-230ENST00000528922 PITPNM1O00562 1244 aa13.33□□□□□ -0.28
CD44-230ENST00000528922 IFNLR1Q8IU57 520 aaPredicted RBP13.32□□□□□ -0.28
CD44-230ENST00000528922 MIER1Q8N108 512 aa13.27□□□□□ -0.29
CD44-230ENST00000528922 PRR29P0C7W0 189 aa13.25□□□□□ -0.29
CD44-230ENST00000528922 PLCD3Q8N3E9 789 aa13.25□□□□□ -0.29
CD44-230ENST00000528922 RTN4Q9NQC3 1192 aaKnown RBP13.22□□□□□ -0.29
CD44-230ENST00000528922 AMER1Q5JTC6 1135 aaPredicted RBP13.18□□□□□ -0.3
CD44-230ENST00000528922 KLHL34Q8N239 644 aa13.16□□□□□ -0.3
CD44-230ENST00000528922 CREBZFQ9NS37 354 aa13.15□□□□□ -0.3
CD44-230ENST00000528922 PLEKHG5O94827 1062 aa13.11□□□□□ -0.31
CD44-230ENST00000528922 CHRDL2Q6WN34 429 aa13.1□□□□□ -0.31
CD44-230ENST00000528922 SPOCK2Q92563 424 aa13.09□□□□□ -0.31
CD44-230ENST00000528922 MNX1P50219 401 aaPredicted RBP13.06□□□□□ -0.32
CD44-230ENST00000528922 FXR2P51116 673 aaKnown RBP eCLIP13.05□□□□□ -0.32
CD44-230ENST00000528922 CHADLQ6NUI6 762 aa13.05□□□□□ -0.32
CD44-230ENST00000528922 ZBTB47Q9UFB7 747 aaPredicted RBP13.04□□□□□ -0.32
CD44-230ENST00000528922 PRKAR2AP13861 404 aaKnown RBP12.98□□□□□ -0.33
CD44-230ENST00000528922 PIP4P2Q8N4L2 257 aa12.98□□□□□ -0.33
CD44-230ENST00000528922 NUBP1P53384 320 aa12.94□□□□□ -0.34
CD44-230ENST00000528922 PKD2Q13563 968 aa12.93□□□□□ -0.34
CD44-230ENST00000528922 FARP1Q9Y4F1 1045 aaPredicted RBP12.92□□□□□ -0.34
CD44-230ENST00000528922 POTEHQ6S545 545 aa12.88□□□□□ -0.35
CD44-230ENST00000528922 NPM1P06748 294 aaKnown RBP eCLIP12.88□□□□□ -0.35
CD44-230ENST00000528922 RASEFQ8IZ41 740 aa12.86□□□□□ -0.35
CD44-230ENST00000528922 CIZ1Q9ULV3 898 aaPredicted RBP12.86□□□□□ -0.35
CD44-230ENST00000528922 DCAF8Q5TAQ9 597 aa12.81□□□□□ -0.36
CD44-230ENST00000528922 GSE1Q14687 1217 aa12.79□□□□□ -0.36
CD44-230ENST00000528922 ECM2O94769 699 aaPredicted RBP12.78□□□□□ -0.36
CD44-230ENST00000528922 FAM212AQ96EL1 285 aa12.77□□□□□ -0.37
CD44-230ENST00000528922 TSPYL2Q9H2G4 693 aaPredicted RBP12.72□□□□□ -0.37
CD44-230ENST00000528922 RGL2O15211 777 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms