RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ANXA13P27216 316 aa7.97□□□□□ -1.13
SYNE1-213ENST00000448038 HPDP32754 393 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-213ENST00000448038 CPT1AP50416 773 aa7.97□□□□□ -1.13
SYNE1-213ENST00000448038 GUCY2FP51841 1108 aa7.97□□□□□ -1.13
SYNE1-213ENST00000448038 ITIH3Q06033 890 aa7.97□□□□□ -1.13
SYNE1-213ENST00000448038 GABPAQ06546 454 aa7.97□□□□□ -1.13
SYNE1-213ENST00000448038 KSR1Q8IVT5 923 aa7.97□□□□□ -1.13
SYNE1-213ENST00000448038 NKIRAS1Q9NYS0 192 aa7.97□□□□□ -1.13
SYNE1-213ENST00000448038 SYNPO2Q9UMS6 1093 aa7.97□□□□□ -1.13
SYNE1-213ENST00000448038 TBC1D12O60347 775 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 CYP2C9P11712 490 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 IRX5P78411 483 aaPredicted RBP7.96□□□□□ -1.13
SYNE1-213ENST00000448038 CCDC144BQ3MJ40 725 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 EARS2Q5JPH6 523 aaKnown RBP7.96□□□□□ -1.13
SYNE1-213ENST00000448038 RHOT2Q8IXI1 618 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 NLGN2Q8NFZ4 835 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 GOLGA6BA6NDN3 693 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 YDJCA8MPS7 323 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 EIF3DO15371 548 aaKnown RBP eCLIP7.96□□□□□ -1.13
SYNE1-213ENST00000448038 NPM3O75607 178 aaKnown RBP7.96□□□□□ -1.13
SYNE1-213ENST00000448038 KRT1P04264 644 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 ELF1P32519 619 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 SARNPP82979 210 aaKnown RBP7.96□□□□□ -1.13
SYNE1-213ENST00000448038 MTMR3Q13615 1198 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 EDRF1Q3B7T1 1238 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 ELOA2Q8IYF1 753 aaPredicted RBP7.96□□□□□ -1.13
SYNE1-213ENST00000448038 DNERQ8NFT8 737 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 KRT12Q99456 494 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 SYT17Q9BSW7 474 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 RUSC1Q9BVN2 902 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 VPS37BQ9H9H4 285 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 CYP26B1Q9NR63 512 aa7.96□□□□□ -1.13
SYNE1-213ENST00000448038 OAZ1P54368 228 aa7.96□□□□□ -1.14
SYNE1-213ENST00000448038 PGM5Q15124 567 aa7.96□□□□□ -1.14
SYNE1-213ENST00000448038 SNRNP35Q16560 246 aaKnown RBP7.96□□□□□ -1.14
SYNE1-213ENST00000448038 TOGARAM2Q6ZUX3 1019 aa7.96□□□□□ -1.14
SYNE1-213ENST00000448038 TAB3Q8N5C8 712 aaPredicted RBP7.96□□□□□ -1.14
SYNE1-213ENST00000448038 SCINQ9Y6U3 715 aa7.96□□□□□ -1.14
SYNE1-213ENST00000448038 IGSF9BQ9UPX0 1349 aa7.96□□□□□ -1.14
SYNE1-213ENST00000448038 MANSC4A6NHS7 340 aaPredicted RBP7.96□□□□□ -1.14
SYNE1-213ENST00000448038 PRPSAP2O60256 369 aa7.96□□□□□ -1.14
SYNE1-213ENST00000448038 SUPT20HL2P0C7V6 817 aa7.96□□□□□ -1.14
SYNE1-213ENST00000448038 GFPT1Q06210 699 aaPredicted RBP7.96□□□□□ -1.14
SYNE1-213ENST00000448038 SLC30A10Q6XR72 485 aa7.96□□□□□ -1.14
SYNE1-213ENST00000448038 RUFY4Q6ZNE9 571 aa7.96□□□□□ -1.14
SYNE1-213ENST00000448038 ENOSF1Q7L5Y1 443 aa7.96□□□□□ -1.14
SYNE1-213ENST00000448038 SRGAP1Q7Z6B7 1085 aa7.96□□□□□ -1.14
SYNE1-213ENST00000448038 TSC1Q92574 1164 aa7.96□□□□□ -1.14
SYNE1-213ENST00000448038 HINFPQ9BQA5 517 aa7.96□□□□□ -1.14
SYNE1-213ENST00000448038 CALN1Q9BXU9 219 aa7.96□□□□□ -1.14
SYNE1-213ENST00000448038 AGO4Q9HCK5 861 aaKnown RBP7.96□□□□□ -1.14
SYNE1-213ENST00000448038 CNOT8Q9UFF9 292 aaKnown RBP7.96□□□□□ -1.14
SYNE1-213ENST00000448038 SETD1AO15047 1707 aaKnown RBP7.96□□□□□ -1.14
SYNE1-213ENST00000448038 GOLGA6CA6NDK9 693 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 RRN3P2A6NIE6 340 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 PGRMC1O00264 195 aaKnown RBP7.95□□□□□ -1.14
SYNE1-213ENST00000448038 GOLGA6DP0CG33 693 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 RFX1P22670 979 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 ITKQ08881 620 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 DENND2CQ68D51 928 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 CROCCP2Q86T23 111 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 AMIGO3Q86WK7 504 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 RNF139Q8WU17 664 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 GOLGA6AQ9NYA3 693 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 PHRF1Q9P1Y6 1649 aaKnown RBP7.95□□□□□ -1.14
SYNE1-213ENST00000448038 RGPD2P0DJD1 1756 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 ATF2P15336 505 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 CAPN2P17655 700 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 ARL4AP40617 200 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 TEX2Q8IWB9 1127 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 CYP2W1Q8TAV3 490 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 PTPN22Q9Y2R2 807 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 UBE4BO95155 1302 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 PASKQ96RG2 1323 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 A0A1B0GTH6 734 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 LRRD1A4D1F6 860 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 CYP2C8P10632 490 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 ZNF18P17022 549 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 GNA15P30679 374 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 BRD3Q15059 726 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 CEP57Q86XR8 500 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 PALM2Q8IXS6 379 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 KCTD6Q8NC69 237 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 KIFC3Q9BVG8 833 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 HPSEQ9Y251 543 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 AHDC1Q5TGY3 1603 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-213ENST00000448038 STAMBPO95630 424 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 MUTP22033 750 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 TSPY1Q01534 308 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 GUCY2DQ02846 1103 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 CDO1Q16878 200 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 SGO2Q562F6 1265 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 CPLX4Q7Z7G2 160 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 MICAL1Q8TDZ2 1067 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 PBKQ96KB5 322 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 RANBP17Q9H2T7 1088 aaKnown RBP7.95□□□□□ -1.14
SYNE1-213ENST00000448038 NGRNQ9NPE2 291 aaKnown RBP7.95□□□□□ -1.14
SYNE1-213ENST00000448038 SLC12A6Q9UHW9 1150 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 ZBBXA8MT70 800 aa7.95□□□□□ -1.14
SYNE1-213ENST00000448038 RSPH10B2B2RC85 870 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms