RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 PAMP19021 973 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 SDC4P31431 198 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 AP1B1Q10567 949 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 CRLF3Q8IUI8 442 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 NFIXQ14938 502 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 TMEM259Q4ZIN3 620 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 EFHD1Q9BUP0 239 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 PPARGC1AQ9UBK2 798 aaKnown RBP18.32■□□□□ 0.52
PTPRF-209ENST00000438120 PVALEFA0A1B0GWK0 134 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 SLC10A5Q5PT55 438 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 SRRM1Q8IYB3 904 aaKnown RBP18.32■□□□□ 0.52
PTPRF-209ENST00000438120 SIK2Q9H0K1 926 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 GTSE1Q9NYZ3 720 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 SETD1BQ9UPS6 1966 aaKnown RBP18.32■□□□□ 0.52
PTPRF-209ENST00000438120 PPFIA2O75334 1257 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 RECQLP46063 649 aaPredicted RBP18.32■□□□□ 0.52
PTPRF-209ENST00000438120 DRP2Q13474 957 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 DDX47Q9H0S4 455 aaKnown RBP18.32■□□□□ 0.52
PTPRF-209ENST00000438120 CCDC188H7C350 402 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 CALB1P05937 261 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 EN1Q05925 392 aaPredicted RBP18.32■□□□□ 0.52
PTPRF-209ENST00000438120 EPC1Q9H2F5 836 aa18.32■□□□□ 0.52
PTPRF-209ENST00000438120 TAC1P20366 129 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 PSMC5P62195 406 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 RGL1Q9NZL6 768 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 POU5F1BQ06416 359 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 CCDC144BQ3MJ40 725 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 CLEC10AQ8IUN9 316 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 FBXO41Q8TF61 875 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 ACAD9Q9H845 621 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 HMGB1P1B2RPK0 211 aaPredicted RBP18.31■□□□□ 0.52
PTPRF-209ENST00000438120 HADHAP40939 763 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 PPP1R18Q6NYC8 613 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 MMTAG2Q9BU76 263 aaKnown RBP18.31■□□□□ 0.52
PTPRF-209ENST00000438120 ISCA1Q9BUE6 129 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 SCAF8Q9UPN6 1271 aaKnown RBP18.31■□□□□ 0.52
PTPRF-209ENST00000438120 A8MXQ7 604 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 NEMP1O14524 444 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 ANO4Q32M45 955 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 SHC4Q6S5L8 630 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 LRRC31Q6UY01 552 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 GLYCTKQ8IVS8 523 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 RBAKQ9NYW8 714 aaPredicted RBP18.31■□□□□ 0.52
PTPRF-209ENST00000438120 EMSYQ7Z589 1322 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 SFNP31947 248 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 MXD3Q9BW11 206 aa18.31■□□□□ 0.52
PTPRF-209ENST00000438120 NCAPD2Q15021 1401 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 TTC26A0AVF1 554 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 SNX2O60749 519 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 NMT1P30419 496 aaKnown RBP18.3■□□□□ 0.52
PTPRF-209ENST00000438120 TFDP2Q14188 446 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 KRT80Q6KB66 452 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 PPM1NQ8N819 430 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 NCLNQ969V3 563 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 TRIM4Q9C037 500 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 FAM8A1Q9UBU6 413 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 MID2Q9UJV3 735 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 USP27XA6NNY8 438 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 MIF4GDA9UHW6 222 aaKnown RBP18.3■□□□□ 0.52
PTPRF-209ENST00000438120 CHGBP05060 677 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 HOXA7P31268 230 aaPredicted RBP18.3■□□□□ 0.52
PTPRF-209ENST00000438120 MTMR2Q13614 643 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 SYCP2LQ5T4T6 812 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 EMBQ6PCB8 327 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 LDHDQ86WU2 507 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 SRBD1Q8N5C6 995 aaKnown RBP18.3■□□□□ 0.52
PTPRF-209ENST00000438120 NBPF26B4DH59 902 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 PPARGP37231 505 aaPredicted RBP18.3■□□□□ 0.52
PTPRF-209ENST00000438120 TAF11Q15544 211 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 ACCSLQ4AC99 568 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 NBPF10Q6P3W6 841 aaKnown RBP18.3■□□□□ 0.52
PTPRF-209ENST00000438120 NBPF15Q8N660 670 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 MRPL4Q9BYD3 311 aaKnown RBP18.3■□□□□ 0.52
PTPRF-209ENST00000438120 HPCAL4Q9UM19 191 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 MAPK13O15264 365 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 ESRRBO95718 433 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 PNMA6AP0CW24 399 aaPredicted RBP18.3■□□□□ 0.52
PTPRF-209ENST00000438120 LCP1P13796 627 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 PAPOLAP51003 745 aaKnown RBP18.3■□□□□ 0.52
PTPRF-209ENST00000438120 KIAA1755Q5JYT7 1200 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 SPARCL1Q14515 664 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 DCAF4L1Q3SXM0 396 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 FAM102AQ5T9C2 384 aaPredicted RBP18.3■□□□□ 0.52
PTPRF-209ENST00000438120 SARM1Q6SZW1 724 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 KDELC2Q7Z4H8 507 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 CCNYL1Q8N7R7 359 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 KIF12Q96FN5 646 aa18.3■□□□□ 0.52
PTPRF-209ENST00000438120 DHX35Q9H5Z1 703 aaKnown RBP18.3■□□□□ 0.52
PTPRF-209ENST00000438120 GPS1Q13098 491 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 GRAMD1BQ3KR37 738 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 KRT39Q6A163 491 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 NDUFAF2Q8N183 169 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 STRIP2Q9ULQ0 834 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 MAP3K7O43318 606 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 GGCXP38435 758 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 MXD4Q14582 209 aaPredicted RBP18.29■□□□□ 0.52
PTPRF-209ENST00000438120 PPP4R4Q6NUP7 873 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 APOBEC3FQ8IUX4 373 aaKnown RBP18.29■□□□□ 0.52
PTPRF-209ENST00000438120 C1orf54Q8WWF1 131 aa18.29■□□□□ 0.52
PTPRF-209ENST00000438120 SMYD3Q9H7B4 428 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms