RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 EFCC1Q9HA90 598 aa7.4□□□□□ -1.23
SF3B1-201ENST00000335508 ADAM22Q9P0K1 906 aa7.4□□□□□ -1.23
SF3B1-201ENST00000335508 TRAF3IP3Q9Y228 551 aa7.4□□□□□ -1.23
SF3B1-201ENST00000335508 IGKV6D-41A0A0C4DH26 115 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 CCDC151A5D8V7 595 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 SPDYE16A6NNV3 312 aaPredicted RBP7.39□□□□□ -1.23
SF3B1-201ENST00000335508 HSF2BPO75031 334 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 GRK7Q8WTQ7 553 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 SLC5A5Q92911 643 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 FAM107BQ9H098 131 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.39□□□□□ -1.23
SF3B1-201ENST00000335508 KIAA1257Q9ULG3 409 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 PCDHB4Q9Y5E5 795 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 AKAP12Q02952 1782 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 H0YHG0 523 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 DAPK3O43293 454 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 GRB10Q13322 594 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 NOL9Q5SY16 702 aaKnown RBP7.39□□□□□ -1.23
SF3B1-201ENST00000335508 BZW1Q7L1Q6 419 aaKnown RBP7.39□□□□□ -1.23
SF3B1-201ENST00000335508 CCDC105Q8IYK2 499 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 DESI2Q9BSY9 194 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 UBIAD1Q9Y5Z9 338 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 PGRMC1O00264 195 aaKnown RBP7.39□□□□□ -1.23
SF3B1-201ENST00000335508 APBA1Q02410 837 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 RHPN2Q8IUC4 686 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 MSL3Q8N5Y2 521 aaKnown RBP7.39□□□□□ -1.23
SF3B1-201ENST00000335508 SMC1BQ8NDV3 1235 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 SYN2Q92777 582 aaPredicted RBP7.39□□□□□ -1.23
SF3B1-201ENST00000335508 HSD17B14Q9BPX1 270 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 ROBO1Q9Y6N7 1651 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 KCPQ6ZWJ8 1503 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 SFI1A8K8P3 1242 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 LRRN2O75325 713 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 IL18RAPO95256 599 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 PCSK1P29120 753 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 NMT1P30419 496 aaKnown RBP7.39□□□□□ -1.23
SF3B1-201ENST00000335508 SND1Q7KZF4 910 aaKnown RBP eCLIP7.39□□□□□ -1.233e-6■■■□□ 16.5
SF3B1-201ENST00000335508 GPATCH11Q8N954 259 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 PPP2R3CQ969Q6 453 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 ASB7Q9H672 318 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 PNPLA4P41247 253 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 ERVK-9P63128 1117 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 ERVK-24P63145 666 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 SGSM1Q2NKQ1 1148 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 ZNF699Q32M78 642 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 WDR72Q3MJ13 1102 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 ZNF384Q8TF68 577 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 MTMR9Q96QG7 549 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 FAM213AQ9BRX8 229 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 TARS2Q9BW92 718 aaKnown RBP7.39□□□□□ -1.23
SF3B1-201ENST00000335508 KCNMB3Q9NPA1 279 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 UBE2TQ9NPD8 197 aaPredicted RBP7.39□□□□□ -1.23
SF3B1-201ENST00000335508 RAB20Q9NX57 234 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 CYP39A1Q9NYL5 469 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 CAPN11Q9UMQ6 739 aa7.39□□□□□ -1.23
SF3B1-201ENST00000335508 UBQLN1Q9UMX0 589 aaKnown RBP7.39□□□□□ -1.23
SF3B1-201ENST00000335508 MEIS2O14770 477 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 FOXP2O15409 715 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 SLC37A4O43826 429 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 CD4P01730 458 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 MARK3P27448 753 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 CASP1P29466 404 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 ELAVL2Q12926 359 aaKnown RBP7.38□□□□□ -1.23
SF3B1-201ENST00000335508 NT5DC1Q5TFE4 455 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 SH3RF1Q7Z6J0 888 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 TTC13Q8NBP0 860 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 MYRIPQ8NFW9 859 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 STK33Q9BYT3 514 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 PXMP2Q9NR77 195 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 NID2Q14112 1375 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 ZRANB2O95218 330 aaKnown RBP eCLIP7.38□□□□□ -1.23
SF3B1-201ENST00000335508 IFNB1P01574 187 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 ARP10275 920 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 PRMT2P55345 433 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 CYP27A1Q02318 531 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 ANKRD40Q6AI12 368 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 TTI2Q6NXR4 508 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 CYP26B1Q9NR63 512 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 EHD2Q9NZN4 543 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 ADGRG1Q9Y653 693 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 FRMPD4Q14CM0 1322 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 PABPN1LA6NDY0 278 aaKnown RBP7.38□□□□□ -1.23
SF3B1-201ENST00000335508 KBTBD13C9JR72 458 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 PDHXO00330 501 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 HOXA2O43364 376 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 PAX3P23760 479 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 ELF1P32519 619 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 PPP2R5CQ13362 524 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 SNRNP35Q16560 246 aaKnown RBP7.38□□□□□ -1.23
SF3B1-201ENST00000335508 OTOP1Q7RTM1 612 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 PBKQ96KB5 322 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 TINF2Q9BSI4 451 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 AGPAT3Q9NRZ7 376 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 TMEM51Q9NW97 253 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 UVRAGQ9P2Y5 699 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 DIS3Q9Y2L1 958 aaKnown RBP7.38□□□□□ -1.23
SF3B1-201ENST00000335508 TOPAZ1Q8N9V7 1692 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 ADM5C9JUS6 153 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 ATP5DP30049 168 aa7.38□□□□□ -1.23
SF3B1-201ENST00000335508 FMO5P49326 533 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms