RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 CYFIP1Q7L576 1253 aa9.3□□□□□ -0.92
PTCD3-201ENST00000254630 GAS2L3Q86XJ1 694 aa9.3□□□□□ -0.92
PTCD3-201ENST00000254630 FAM84BQ96KN1 310 aaPredicted RBP9.3□□□□□ -0.92
PTCD3-201ENST00000254630 GJB4Q9NTQ9 266 aa9.3□□□□□ -0.92
PTCD3-201ENST00000254630 PLAAQ9Y263 795 aa9.3□□□□□ -0.92
PTCD3-201ENST00000254630 IPO5O00410 1097 aaKnown RBP9.29□□□□□ -0.92
PTCD3-201ENST00000254630 ESRRBO95718 433 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 FDX1P10109 184 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 AKR1B1P15121 316 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 CA4P22748 312 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 LIG3P49916 1009 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 USP11P51784 963 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 KCNH2Q12809 1159 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 RNF217Q8TC41 542 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 RAET1EQ8TD07 263 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 IFT88Q13099 833 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 PRPF38AQ8NAV1 312 aaKnown RBP9.29□□□□□ -0.92
PTCD3-201ENST00000254630 PDCD6IPQ8WUM4 868 aaKnown RBP9.29□□□□□ -0.92
PTCD3-201ENST00000254630 ZNF668Q96K58 619 aaPredicted RBP9.29□□□□□ -0.92
PTCD3-201ENST00000254630 ZBTB18Q99592 522 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 PLA2G12BQ9BX93 195 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 SUCLA2Q9P2R7 463 aaPredicted RBP9.29□□□□□ -0.92
PTCD3-201ENST00000254630 PPP1R9AQ9ULJ8 1098 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 USP31Q70CQ4 1352 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 C1orf167Q5SNV9 1468 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 LMTK2Q8IWU2 1503 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 FRMPD1Q5SYB0 1578 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 SNAP23O00161 211 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 MGEA5O60502 916 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 ACSL3O95573 720 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 RALAP11233 206 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 PHEXP78562 749 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 RBAKQ9NYW8 714 aaPredicted RBP9.29□□□□□ -0.92
PTCD3-201ENST00000254630 HACL1Q9UJ83 578 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 SLC13A4Q9UKG4 626 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 DFFAO00273 331 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 SMIM24O75264 130 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 SULT1E1P49888 294 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 TBC1D16Q8TBP0 767 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 SH3TC2Q8TF17 1288 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 SNX19Q92543 992 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 CRAMP1Q96RY5 1269 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 JPH1Q9HDC5 661 aaPredicted RBP9.29□□□□□ -0.92
PTCD3-201ENST00000254630 PRDM5Q9NQX1 630 aaPredicted RBP9.29□□□□□ -0.92
PTCD3-201ENST00000254630 HEY1Q9Y5J3 304 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 GOLGA8MH3BSY2 632 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 TDP2O95551 362 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 CPB1P15086 417 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 RFC1P35251 1148 aaPredicted RBP9.29□□□□□ -0.92
PTCD3-201ENST00000254630 HADHAP40939 763 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 SCARF1Q14162 830 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 VPS72Q15906 364 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 ZNF560Q96MR9 790 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 SERPINI1Q99574 410 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 HEMGNQ9BXL5 484 aa9.29□□□□□ -0.92
PTCD3-201ENST00000254630 MRPL46Q9H2W6 279 aaKnown RBP9.29□□□□□ -0.92
PTCD3-201ENST00000254630 EFHC2Q5JST6 749 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 ANGPTL8Q6UXH0 198 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 LDHDQ86WU2 507 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 CRLF3Q8IUI8 442 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 DHX40Q8IX18 779 aaKnown RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 PDIK1LQ8N165 341 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 TTC30BQ8N4P2 665 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 PPWD1Q96BP3 646 aaKnown RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 FGD4Q96M96 766 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 TRIM62Q9BVG3 475 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 ALDH8A1Q9H2A2 487 aaPredicted RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 G3BP2Q9UN86 482 aaKnown RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 REREQ9P2R6 1566 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 KBTBD13C9JR72 458 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 FLT1P17948 1338 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 PSMC1P62191 440 aaKnown RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 CAV1Q03135 178 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 SPATA31A6Q5VVP1 1343 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 CDKL3Q8IVW4 592 aaPredicted RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 YAF2Q8IY57 180 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 SCYL3Q8IZE3 742 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 STAG2Q8N3U4 1231 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 TTC39CQ8N584 583 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 PARD6BQ9BYG5 372 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 H3BRJ5 948 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 GRIK1P39086 918 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 HMGCS2P54868 508 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 NAALADL2Q58DX5 795 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 ACAP3Q96P50 834 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 EFHD1Q9BUP0 239 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 TIPINQ9BVW5 301 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 KATNAL1Q9BW62 490 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 THEGQ9P2T0 379 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 NFU1Q9UMS0 254 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 MIF4GDA9UHW6 222 aaKnown RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 HMGB1P1B2RPK0 211 aaPredicted RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 COPEO14579 308 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 PRKCBP05771 671 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 ATP1A3P13637 1013 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 TAP1Q03518 808 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 HABP4Q5JVS0 413 aaKnown RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 SPATA2LQ8IUW3 424 aaPredicted RBP9.28□□□□□ -0.92
PTCD3-201ENST00000254630 GIPC2Q8TF65 315 aa9.28□□□□□ -0.92
PTCD3-201ENST00000254630 UBE2Q2Q8WVN8 375 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms