RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 PDCD2LQ9BRP1 358 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 ZCCHC17Q9NP64 241 aaKnown RBP14.69□□□□□ -0.06
LDLR-201ENST00000252444 ST7Q9NRC1 585 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 ASNSD1Q9NWL6 643 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 ZDHHC9Q9Y397 364 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 ATP8B1O43520 1251 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 SGSM1Q2NKQ1 1148 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 ZBTB33Q86T24 672 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 ZNF410Q86VK4 478 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 SPIRE2Q8WWL2 714 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 AGBL1Q96MI9 1066 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 FAM49AQ9H0Q0 323 aaPredicted RBP14.69□□□□□ -0.06
LDLR-201ENST00000252444 AAASQ9NRG9 546 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 SLC8A2Q9UPR5 921 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 CCDC188H7C350 402 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 PDHXO00330 501 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 DDNO94850 711 aaPredicted RBP14.69□□□□□ -0.06
LDLR-201ENST00000252444 ADKP55263 362 aaKnown RBP14.69□□□□□ -0.06
LDLR-201ENST00000252444 ACTR2P61160 394 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 GLE1Q53GS7 698 aaKnown RBP14.69□□□□□ -0.06
LDLR-201ENST00000252444 CCDC105Q8IYK2 499 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 TAAR1Q96RJ0 339 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 KIAA1257Q9ULG3 409 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 STAP1Q9ULZ2 295 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 RGPD2P0DJD1 1756 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 C10orf71Q711Q0 1435 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 UBE2Q2LH0YL09 131 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 CLTAP09496 248 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 NOGQ13253 232 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 ACER1Q8TDN7 264 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 CAPZA3Q96KX2 299 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 GLT1D1Q96MS3 346 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 ASIC3Q9UHC3 531 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 DNAJC12Q9UKB3 198 aa14.69□□□□□ -0.06
LDLR-201ENST00000252444 GNRH1P01148 92 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 KCNH2Q12809 1159 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 OTUD6BQ8N6M0 293 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 CYP26B1Q9NR63 512 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 MAPRE1Q15691 268 aaKnown RBP14.68□□□□□ -0.06
LDLR-201ENST00000252444 CPVLQ9H3G5 476 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 PCIF1Q9H4Z3 704 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 NHEJ1Q9H9Q4 299 aaPredicted RBP14.68□□□□□ -0.06
LDLR-201ENST00000252444 IL17RBQ9NRM6 502 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 NKIRAS1Q9NYS0 192 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 PTPAQ15257 358 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 ERICH1Q86X53 443 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 RNF139Q8WU17 664 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 ZKSCAN4Q969J2 545 aaPredicted RBP14.68□□□□□ -0.06
LDLR-201ENST00000252444 AKR1A1P14550 325 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 SLC1A1P43005 524 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 ITIH3Q06033 890 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 PGM5Q15124 567 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 TAF2Q6P1X5 1199 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 TMC2Q8TDI7 906 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 MTG1Q9BT17 334 aaPredicted RBP14.68□□□□□ -0.06
LDLR-201ENST00000252444 COL1A2P08123 1366 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 SSU72P8A0A1W2PR75 194 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 ZFXP17010 805 aaPredicted RBP14.68□□□□□ -0.06
LDLR-201ENST00000252444 ACADSBP45954 432 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 TFDP2Q14188 446 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 SESTD1Q86VW0 696 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 ARID3AQ99856 593 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 DDX4Q9NQI0 724 aaKnown RBP14.68□□□□□ -0.06
LDLR-201ENST00000252444 OLFML3Q9NRN5 406 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 USTQ9Y2C2 406 aa14.68□□□□□ -0.06
LDLR-201ENST00000252444 CAPN2P17655 700 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 EFCAB13Q8IY85 973 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 ANKS4BQ8N8V4 417 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 C12orf42Q96LP6 360 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 APOL6Q9BWW8 343 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 TMEM8AQ9HCN3 771 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 GRID2IPA4D2P6 1211 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 SORBS3O60504 671 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 NDUFA10O95299 355 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 ERCC6LQ2NKX8 1250 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 C6orf163Q5TEZ5 329 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 NDUFAF2Q8N183 169 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.67□□□□□ -0.06
LDLR-201ENST00000252444 METTL16Q86W50 562 aaKnown RBP14.67□□□□□ -0.06
LDLR-201ENST00000252444 GRAMD1CQ8IYS0 662 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 TMX1Q9H3N1 280 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 UNC45AQ9H3U1 944 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 RRAGCQ9HB90 399 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 HSPBP1Q9NZL4 362 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 BCCIPQ9P287 314 aaKnown RBP eCLIP14.67□□□□□ -0.06
LDLR-201ENST00000252444 INTUQ9ULD6 942 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 GDAQ9Y2T3 454 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 SPDYE5A6NIY4 337 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 AP3B1O00203 1094 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 PGRMC1O00264 195 aaKnown RBP14.67□□□□□ -0.06
LDLR-201ENST00000252444 MRPS9P82933 396 aaKnown RBP14.67□□□□□ -0.06
LDLR-201ENST00000252444 ARHGAP18Q8N392 663 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 SH3TC2Q8TF17 1288 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 HEXIM2Q96MH2 286 aaKnown RBP14.67□□□□□ -0.06
LDLR-201ENST00000252444 REEP2Q9BRK0 252 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 CDC23Q9UJX2 597 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 DSEQ9UL01 958 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 CAPN11Q9UMQ6 739 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 HPSEQ9Y251 543 aa14.67□□□□□ -0.06
LDLR-201ENST00000252444 MAPK13O15264 365 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms