RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	VMA5	P31412	392 aa	Known RBP	4.96	□□□□□ -1.62
NUP1	YOR098C	LIP5	P32875	414 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	CBP4	P37267	147 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	SUL1	P38359	859 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	ERV46	P39727	415 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	MIT1	P40002	666 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	AGP3	P43548	558 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	COX16	P47081	118 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	SEH1	P53011	349 aa	Known RBP	4.96	□□□□□ -1.62
NUP1	YOR098C	ORM1	P53224	222 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	OST6	Q03723	332 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	DAS2	Q12084	232 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	SEY1	Q99287	776 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	YCR006C	P25350	157 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	TOA2	P32774	122 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	TAF14	P35189	244 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	ATG7	P38862	630 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	SEC72	P39742	193 aa	Known RBP	4.96	□□□□□ -1.62
NUP1	YOR098C	MMF1	P40185	145 aa	Known RBP	4.96	□□□□□ -1.62
NUP1	YOR098C	STB1	P42845	420 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	RPC17	P47076	161 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	NOP19	P53317	196 aa	Predicted RBP	4.96	□□□□□ -1.62
NUP1	YOR098C	SLM3	Q12093	417 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	YKL183C-A	Q3E765	70 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	YCL012C	Q8J0M4	134 aa		4.96	□□□□□ -1.62
NUP1	YOR098C	VAM7	P32912	316 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	KAE1	P36132	386 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	YNL194C	P40169	301 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	PHB2	P50085	310 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	ALG11	P53954	548 aa	Known RBP	4.95	□□□□□ -1.62
NUP1	YOR098C	BER1	Q06688	274 aa	Known RBP	4.95	□□□□□ -1.62
NUP1	YOR098C	PBP4	Q07362	185 aa	Known RBP	4.95	□□□□□ -1.62
NUP1	YOR098C	SNA4	Q07549	140 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	SNF8	Q12483	233 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	YOR338W	Q99326	363 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	ARF1	P11076	181 aa	Known RBP	4.95	□□□□□ -1.62
NUP1	YOR098C	ISC1	P40015	477 aa	Known RBP	4.95	□□□□□ -1.62
NUP1	YOR098C	YPL014W	Q02606	381 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	SKI8	Q02793	397 aa	Predicted RBP	4.95	□□□□□ -1.62
NUP1	YOR098C	LGE1	Q02796	332 aa	Known RBP	4.95	□□□□□ -1.62
NUP1	YOR098C	TMN2	Q04562	672 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	4.95	□□□□□ -1.62	not detected
NUP1	YOR098C	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.95	□□□□□ -1.62	not detected
NUP1	YOR098C	HPR1	P17629	752 aa	Known RBP	4.95	□□□□□ -1.62
NUP1	YOR098C	KIN3	P22209	435 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	YBP1	P38315	674 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	SHO1	P40073	367 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	YNL181W	P53878	407 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	CAC2	Q04199	468 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	IVY1	Q04934	453 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	YDR278C	Q05612	105 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	YLR108C	Q12259	485 aa		4.95	□□□□□ -1.62
NUP1	YOR098C	SNA3	P14359	133 aa		4.94	□□□□□ -1.62
NUP1	YOR098C	YGL117W	P53133	265 aa		4.94	□□□□□ -1.62
NUP1	YOR098C	PCP1	P53259	346 aa		4.94	□□□□□ -1.62
NUP1	YOR098C	OKP1	P53298	406 aa		4.94	□□□□□ -1.62
NUP1	YOR098C	MKC7	P53379	596 aa		4.94	□□□□□ -1.62
NUP1	YOR098C	TMA10	Q06177	86 aa		4.94	□□□□□ -1.62
NUP1	YOR098C	MCA1	Q08601	432 aa		4.94	□□□□□ -1.62
NUP1	YOR098C	REV1	P12689	985 aa		4.94	□□□□□ -1.62
NUP1	YOR098C	SAT4	P25333	603 aa	Known RBP	4.94	□□□□□ -1.62
NUP1	YOR098C	RPS2	P25443	254 aa	Known RBP	4.94	□□□□□ -1.62
NUP1	YOR098C	IES6	P32617	166 aa		4.94	□□□□□ -1.62
NUP1	YOR098C	DTR1	P38125	572 aa		4.94	□□□□□ -1.62
NUP1	YOR098C	ZRG17	P53735	605 aa		4.94	□□□□□ -1.62
NUP1	YOR098C	YOR387C	Q08910	206 aa		4.94	□□□□□ -1.62
NUP1	YOR098C	FAR1	P21268	830 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	URA8	P38627	578 aa	Predicted RBP	4.93	□□□□□ -1.62
NUP1	YOR098C	SUR2	P38992	349 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	HMS2	P47175	358 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	YKR005C	Q02203	525 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	YPL080C	Q02826	108 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	RIO1	Q12196	484 aa	Known RBP	4.93	□□□□□ -1.62
NUP1	YOR098C	ERP3	Q12403	225 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	HEM2	P05373	342 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	MRP1	P10662	321 aa	Known RBP	4.93	□□□□□ -1.62
NUP1	YOR098C	POX1	P13711	748 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	YBR032W	P38223	100 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	SPL2	P38839	148 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	FAU1	P40099	211 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	PDS1	P40316	373 aa	Predicted RBP	4.93	□□□□□ -1.62
NUP1	YOR098C	COS6	P53344	381 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	AI5_BETA	Q9ZZX0	354 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	CSE1	P33307	960 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	CSM2	P40465	213 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	SED5	Q01590	340 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	PLP1	Q04004	230 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	THI72	Q08579	599 aa		4.93	□□□□□ -1.62
NUP1	YOR098C	YMR31	P19955	123 aa		4.92	□□□□□ -1.62
NUP1	YOR098C	ERG4	P25340	473 aa		4.92	□□□□□ -1.62
NUP1	YOR098C	AST1	P35183	429 aa		4.92	□□□□□ -1.62
NUP1	YOR098C	VPS74	Q06385	345 aa		4.92	□□□□□ -1.62
NUP1	YOR098C	MED7	Q08278	222 aa		4.92	□□□□□ -1.62
NUP1	YOR098C	APC9	Q12107	265 aa		4.92	□□□□□ -1.62
NUP1	YOR098C	SET6	Q12529	373 aa		4.92	□□□□□ -1.62
NUP1	YOR098C	TUS1	Q06412	1307 aa		4.92	□□□□□ -1.62
NUP1	YOR098C	TRP3	P00937	484 aa		4.92	□□□□□ -1.62
NUP1	YOR098C	TPK3	P05986	398 aa		4.92	□□□□□ -1.62
NUP1	YOR098C	RSM22	P36056	628 aa		4.92	□□□□□ -1.62
NUP1	YOR098C	SWD2	P36104	329 aa	Predicted RBP	4.92	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 46.5 ms