RNA–Protein interactions for RNA: YFL001W

DEG1, Transcript of tRNA:pseudouridine synthase, yeast

Gene DEG1, Length 1,329 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEG1	YFL001W	MKC7	P53379	596 aa		4.2	□□□□□ -1.74
DEG1	YFL001W	LSC1	P53598	329 aa	Known RBP	4.2	□□□□□ -1.74
DEG1	YFL001W	TDA1	Q03533	586 aa		4.2	□□□□□ -1.74
DEG1	YFL001W	ATC1	Q04005	294 aa		4.2	□□□□□ -1.74
DEG1	YFL001W	YLL007C	Q07799	665 aa		4.2	□□□□□ -1.74
DEG1	YFL001W	SAM4	Q08985	325 aa	Known RBP	4.2	□□□□□ -1.74
DEG1	YFL001W	SLF1	Q12034	447 aa	Known RBP	4.2	□□□□□ -1.74
DEG1	YFL001W	PCL9	Q12477	304 aa		4.2	□□□□□ -1.74
DEG1	YFL001W	GPI12	P23797	304 aa		4.19	□□□□□ -1.74
DEG1	YFL001W	YKR015C	P36111	568 aa		4.19	□□□□□ -1.74
DEG1	YFL001W	RCY1	P39531	840 aa		4.19	□□□□□ -1.74
DEG1	YFL001W	DSE1	P40077	573 aa		4.19	□□□□□ -1.74
DEG1	YFL001W	AGX1	P43567	385 aa		4.19	□□□□□ -1.74
DEG1	YFL001W	WWM1	P43582	211 aa	Known RBP	4.19	□□□□□ -1.74
DEG1	YFL001W	COX16	P47081	118 aa		4.19	□□□□□ -1.74
DEG1	YFL001W	YJR030C	P47101	745 aa		4.19	□□□□□ -1.74
DEG1	YFL001W	OKP1	P53298	406 aa		4.19	□□□□□ -1.74
DEG1	YFL001W	BIO4	P53630	237 aa		4.19	□□□□□ -1.74
DEG1	YFL001W	CRZ1	P53968	678 aa		4.19	□□□□□ -1.74
DEG1	YFL001W	YDL114W	Q07530	308 aa		4.19	□□□□□ -1.74
DEG1	YFL001W	PLP2	Q12017	286 aa		4.19	□□□□□ -1.74
DEG1	YFL001W	SIA1	Q12212	622 aa		4.19	□□□□□ -1.74
DEG1	YFL001W	YGK3	Q12222	375 aa	Predicted RBP	4.19	□□□□□ -1.74
DEG1	YFL001W	YCL021W-A	Q96VH3	125 aa		4.19	□□□□□ -1.74
DEG1	YFL001W	UBA3	Q99344	299 aa		4.19	□□□□□ -1.74
DEG1	YFL001W	UNG1	P12887	359 aa		4.18	□□□□□ -1.74
DEG1	YFL001W	COT1	P32798	439 aa		4.18	□□□□□ -1.74
DEG1	YFL001W	SDH3	P33421	198 aa		4.18	□□□□□ -1.74
DEG1	YFL001W	SPO23	P33757	523 aa		4.18	□□□□□ -1.74
DEG1	YFL001W	AVT5	P38176	459 aa		4.18	□□□□□ -1.74
DEG1	YFL001W	MAM33	P40513	266 aa		4.18	□□□□□ -1.74
DEG1	YFL001W	AIM24	P47127	394 aa		4.18	□□□□□ -1.74
DEG1	YFL001W	LSG1	P53145	640 aa	Known RBP	4.18	□□□□□ -1.74
DEG1	YFL001W	PPT2	Q12036	173 aa		4.18	□□□□□ -1.74
DEG1	YFL001W	ADE6	P38972	1358 aa	Known RBP	4.18	□□□□□ -1.74
DEG1	YFL001W	RPL24A	P04449	155 aa	Known RBP	4.17	□□□□□ -1.74
DEG1	YFL001W	FUN26	P31381	517 aa		4.17	□□□□□ -1.74
DEG1	YFL001W	PRO3	P32263	286 aa	Known RBP	4.17	□□□□□ -1.74
DEG1	YFL001W	SPR1	P32603	445 aa		4.17	□□□□□ -1.74
DEG1	YFL001W	FHL1	P39521	936 aa		4.17	□□□□□ -1.74
DEG1	YFL001W	YIL067C	P40514	678 aa		4.17	□□□□□ -1.74
DEG1	YFL001W	FMP33	P46998	180 aa		4.17	□□□□□ -1.74
DEG1	YFL001W	MTQ1	P53944	314 aa		4.17	□□□□□ -1.74
DEG1	YFL001W	RRN11	Q04712	507 aa		4.17	□□□□□ -1.74
DEG1	YFL001W	HTZ1	Q12692	134 aa	Known RBP	4.17	□□□□□ -1.74
DEG1	YFL001W	YER078W-A	Q3E7A2	54 aa		4.17	□□□□□ -1.74
DEG1	YFL001W	RAD7	P06779	565 aa		4.16	□□□□□ -1.74
DEG1	YFL001W	RPS24A	P0CX31	135 aa	Known RBP	4.16	□□□□□ -1.74
DEG1	YFL001W	RPS24B	P0CX32	135 aa	Known RBP	4.16	□□□□□ -1.74
DEG1	YFL001W	FRS2	P15625	503 aa	Known RBP	4.16	□□□□□ -1.74
DEG1	YFL001W	CSM1	P25651	190 aa		4.16	□□□□□ -1.74
DEG1	YFL001W	ICL1	P28240	557 aa	Predicted RBP	4.16	□□□□□ -1.74
DEG1	YFL001W	ITR2	P30606	609 aa		4.16	□□□□□ -1.74
DEG1	YFL001W	COY1	P34237	679 aa		4.16	□□□□□ -1.74
DEG1	YFL001W	ECM8	P38246	354 aa		4.16	□□□□□ -1.74
DEG1	YFL001W	YFL040W	P43562	540 aa		4.16	□□□□□ -1.74
DEG1	YFL001W	CIN2	P46670	268 aa		4.16	□□□□□ -1.74
DEG1	YFL001W	SCS3	P53012	380 aa		4.16	□□□□□ -1.74
DEG1	YFL001W	CWC25	P53854	179 aa	Known RBP	4.16	□□□□□ -1.74
DEG1	YFL001W	TLG1	Q03322	224 aa		4.16	□□□□□ -1.74
DEG1	YFL001W	YPR091C	Q06833	770 aa		4.16	□□□□□ -1.74
DEG1	YFL001W	TSR1	Q07381	788 aa	Known RBP	4.16	□□□□□ -1.74
DEG1	YFL001W	FCY22	Q12119	530 aa		4.16	□□□□□ -1.74
DEG1	YFL001W	PRP46	Q12417	451 aa	Predicted RBP	4.16	□□□□□ -1.74
DEG1	YFL001W	YBR298C-A	Q8TGK4	73 aa		4.16	□□□□□ -1.74
DEG1	YFL001W	RSR1	P13856	272 aa		4.15	□□□□□ -1.75
DEG1	YFL001W	CHA1	P25379	360 aa	Known RBP	4.15	□□□□□ -1.75
DEG1	YFL001W	RPL16A	P26784	199 aa	Known RBP	4.15	□□□□□ -1.75
DEG1	YFL001W	POP5	P28005	173 aa		4.15	□□□□□ -1.75
DEG1	YFL001W	DTR1	P38125	572 aa		4.15	□□□□□ -1.75
DEG1	YFL001W	SMF2	P38778	549 aa		4.15	□□□□□ -1.75
DEG1	YFL001W	CTM1	P38818	585 aa		4.15	□□□□□ -1.75
DEG1	YFL001W	YGL242C	P53066	181 aa		4.15	□□□□□ -1.75
DEG1	YFL001W	RTN1	Q04947	295 aa	Known RBP	4.15	□□□□□ -1.75
DEG1	YFL001W	SLM3	Q12093	417 aa		4.15	□□□□□ -1.75
DEG1	YFL001W	HEM4	P06174	275 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	MSI1	P13712	422 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	DAL2	P25335	343 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	TMT1	P32643	299 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	HIS2	P38635	335 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	HAC1	P41546	238 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	YJR085C	P47131	105 aa	Known RBP	4.14	□□□□□ -1.75
DEG1	YFL001W	KEL2	P50090	882 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	MST27	P53176	234 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	SPP2	Q02521	185 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	YPL080C	Q02826	108 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	YMR027W	Q04371	470 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	YMR317W	Q04893	1140 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	PBP4	Q07362	185 aa	Known RBP	4.14	□□□□□ -1.75
DEG1	YFL001W	YDL109C	Q12103	647 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	TMS1	Q12116	473 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	ERV2	Q12284	196 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	ICT1	Q12385	394 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	YDL199C	Q12407	687 aa		4.14	□□□□□ -1.75
DEG1	YFL001W	RPS8A	P0CX39	200 aa	Known RBP	4.13	□□□□□ -1.75
DEG1	YFL001W	RPS8B	P0CX40	200 aa	Known RBP	4.13	□□□□□ -1.75
DEG1	YFL001W	RPS18A	P0CX55	146 aa	Known RBP	4.13	□□□□□ -1.75
DEG1	YFL001W	RPS18B	P0CX56	146 aa	Predicted RBP	4.13	□□□□□ -1.75
DEG1	YFL001W	RPB5	P20434	215 aa		4.13	□□□□□ -1.75
DEG1	YFL001W	HSM3	P38348	480 aa		4.13	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 14.8 ms