RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	STP1	Q00947	519 aa		4.86	□□□□□ -1.63
UBP9	YER098W	RMI1	Q02685	241 aa		4.86	□□□□□ -1.63
UBP9	YER098W	TRM82	Q03774	444 aa		4.86	□□□□□ -1.63
UBP9	YER098W	GRS2	Q06817	618 aa		4.86	□□□□□ -1.63
UBP9	YER098W	YOL107W	Q12239	342 aa		4.86	□□□□□ -1.63
UBP9	YER098W	RRP12	Q12754	1228 aa	Known RBP	4.86	□□□□□ -1.63
UBP9	YER098W	YLR358C	O13565	187 aa		4.85	□□□□□ -1.63
UBP9	YER098W	HPR1	P17629	752 aa	Known RBP	4.85	□□□□□ -1.63
UBP9	YER098W	RHB1	P25378	209 aa		4.85	□□□□□ -1.63
UBP9	YER098W	PCL6	P40038	420 aa		4.85	□□□□□ -1.63
UBP9	YER098W	YJR141W	P47172	347 aa	Predicted RBP	4.85	□□□□□ -1.63
UBP9	YER098W	UBC12	P52491	188 aa		4.85	□□□□□ -1.63
UBP9	YER098W	EFM5	P53200	248 aa	Known RBP	4.85	□□□□□ -1.63
UBP9	YER098W	RPT4	P53549	437 aa	Known RBP	4.85	□□□□□ -1.63
UBP9	YER098W	RRP45	Q05636	305 aa	Known RBP	4.85	□□□□□ -1.63
UBP9	YER098W	ECM30	Q06673	1274 aa		4.85	□□□□□ -1.63
UBP9	YER098W	YRM1	Q12340	786 aa		4.85	□□□□□ -1.63
UBP9	YER098W	SAS5	Q99314	248 aa		4.85	□□□□□ -1.63
UBP9	YER098W	SLH1	P53327	1967 aa	Known RBP	4.85	□□□□□ -1.63
UBP9	YER098W	THP2	O13539	261 aa	Known RBP	4.85	□□□□□ -1.63
UBP9	YER098W	BOS1	P25385	244 aa		4.85	□□□□□ -1.63
UBP9	YER098W	ROT2	P38138	954 aa		4.85	□□□□□ -1.63
UBP9	YER098W	NTC20	P38302	140 aa	Predicted RBP	4.85	□□□□□ -1.63
UBP9	YER098W	YHR131C	P38835	850 aa		4.85	□□□□□ -1.63
UBP9	YER098W	COG3	P40094	801 aa		4.85	□□□□□ -1.63
UBP9	YER098W	VRG4	P40107	337 aa		4.85	□□□□□ -1.63
UBP9	YER098W	RFC2	P40348	353 aa		4.85	□□□□□ -1.63
UBP9	YER098W	BNA6	P43619	295 aa		4.85	□□□□□ -1.63
UBP9	YER098W	PDR16	P53860	351 aa	Known RBP	4.85	□□□□□ -1.63
UBP9	YER098W	ARO10	Q06408	635 aa		4.85	□□□□□ -1.63
UBP9	YER098W	ARV1	Q06541	321 aa		4.85	□□□□□ -1.63
UBP9	YER098W	YLR126C	Q12288	251 aa		4.85	□□□□□ -1.63
UBP9	YER098W	PST2	Q12335	198 aa	Known RBP	4.85	□□□□□ -1.63
UBP9	YER098W	RPL31B	P0C2H9	113 aa	Known RBP	4.84	□□□□□ -1.63
UBP9	YER098W	CPR5	P35176	225 aa		4.84	□□□□□ -1.63
UBP9	YER098W	SRY1	P36007	326 aa		4.84	□□□□□ -1.63
UBP9	YER098W	DED81	P38707	554 aa	Known RBP	4.84	□□□□□ -1.63
UBP9	YER098W	YJL132W	P47014	750 aa		4.84	□□□□□ -1.63
UBP9	YER098W	BUD32	P53323	261 aa		4.84	□□□□□ -1.63
UBP9	YER098W	SKO1	Q02100	647 aa		4.84	□□□□□ -1.63
UBP9	YER098W	SMA1	Q02651	245 aa		4.84	□□□□□ -1.63
UBP9	YER098W	MSC1	Q03104	513 aa		4.84	□□□□□ -1.63
UBP9	YER098W	NHP10	Q03435	203 aa		4.84	□□□□□ -1.63
UBP9	YER098W	SCP1	Q08873	200 aa		4.84	□□□□□ -1.63
UBP9	YER098W	LEA1	Q08963	238 aa	Predicted RBP	4.84	□□□□□ -1.63
UBP9	YER098W	YPL119C-A	Q3E751	87 aa		4.84	□□□□□ -1.63
UBP9	YER098W	FLO1	P32768	1537 aa		4.84	□□□□□ -1.63
UBP9	YER098W	CBP2	P03874	630 aa	Predicted RBP	4.84	□□□□□ -1.64
UBP9	YER098W	SPO7	P18410	259 aa		4.84	□□□□□ -1.64
UBP9	YER098W	SAM2	P19358	384 aa	Known RBP	4.84	□□□□□ -1.64
UBP9	YER098W	APA2	P22108	325 aa		4.84	□□□□□ -1.64
UBP9	YER098W	PDR3	P33200	976 aa		4.84	□□□□□ -1.64
UBP9	YER098W	RTT105	P40063	208 aa		4.84	□□□□□ -1.64
UBP9	YER098W	OPT1	P40897	799 aa		4.84	□□□□□ -1.64
UBP9	YER098W	ERG10	P41338	398 aa	Known RBP	4.84	□□□□□ -1.64
UBP9	YER098W	YFL015C	P43578	164 aa		4.84	□□□□□ -1.64
UBP9	YER098W	LSM3	P57743	89 aa	Known RBP	4.84	□□□□□ -1.64
UBP9	YER098W	SLD5	Q03406	294 aa		4.84	□□□□□ -1.64
UBP9	YER098W	BUR2	Q05949	395 aa		4.84	□□□□□ -1.64
UBP9	YER098W	VPS74	Q06385	345 aa		4.84	□□□□□ -1.64
UBP9	YER098W	RAD34	Q06665	692 aa		4.84	□□□□□ -1.64
UBP9	YER098W	NDE2	Q07500	545 aa		4.84	□□□□□ -1.64
UBP9	YER098W	YOR283W	Q12040	230 aa	Known RBP	4.84	□□□□□ -1.64
UBP9	YER098W	MDY2	Q12285	212 aa		4.84	□□□□□ -1.64
UBP9	YER098W	HMS1	Q12398	434 aa		4.84	□□□□□ -1.64
UBP9	YER098W	COS2	P0CX12	379 aa		4.83	□□□□□ -1.64
UBP9	YER098W	COS3	P0CX13	379 aa		4.83	□□□□□ -1.64
UBP9	YER098W	GCY1	P14065	312 aa	Known RBP RIP-Chip data	4.83	□□□□□ -1.64	not detected
UBP9	YER098W	YCL068C	P25593	260 aa		4.83	□□□□□ -1.64
UBP9	YER098W	GAC1	P28006	793 aa		4.83	□□□□□ -1.64
UBP9	YER098W	CTS1	P29029	562 aa		4.83	□□□□□ -1.64
UBP9	YER098W	ITR1	P30605	584 aa		4.83	□□□□□ -1.64
UBP9	YER098W	ATP11	P32453	318 aa		4.83	□□□□□ -1.64
UBP9	YER098W	CDC13	P32797	924 aa	Known RBP	4.83	□□□□□ -1.64
UBP9	YER098W	PTM1	P32857	523 aa		4.83	□□□□□ -1.64
UBP9	YER098W	SUR1	P33300	382 aa		4.83	□□□□□ -1.64
UBP9	YER098W	FMP23	P38231	175 aa		4.83	□□□□□ -1.64
UBP9	YER098W	VPS45	P38932	577 aa		4.83	□□□□□ -1.64
UBP9	YER098W	PTI1	P39927	425 aa	Predicted RBP	4.83	□□□□□ -1.64
UBP9	YER098W	YIR035C	P40579	254 aa		4.83	□□□□□ -1.64
UBP9	YER098W	YJR154W	P47181	346 aa		4.83	□□□□□ -1.64
UBP9	YER098W	YGR168C	P53293	376 aa		4.83	□□□□□ -1.64
UBP9	YER098W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.83	□□□□□ -1.64	not detected
UBP9	YER098W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	4.83	□□□□□ -1.64	not detected
UBP9	YER098W	YPL199C	Q08954	240 aa		4.83	□□□□□ -1.64
UBP9	YER098W	MRH1	Q12117	320 aa	Predicted RBP	4.83	□□□□□ -1.64
UBP9	YER098W	DCN1	Q12395	269 aa		4.83	□□□□□ -1.64
UBP9	YER098W	RPS18A	P0CX55	146 aa	Known RBP	4.83	□□□□□ -1.64
UBP9	YER098W	RPS18B	P0CX56	146 aa	Predicted RBP	4.83	□□□□□ -1.64
UBP9	YER098W	FUS3	P16892	353 aa	Known RBP	4.83	□□□□□ -1.64
UBP9	YER098W	CDC42	P19073	191 aa		4.83	□□□□□ -1.64
UBP9	YER098W	RPL32	P38061	130 aa	Known RBP	4.83	□□□□□ -1.64
UBP9	YER098W	LAG1	P38703	411 aa		4.83	□□□□□ -1.64
UBP9	YER098W	ANS1	P38832	159 aa		4.83	□□□□□ -1.64
UBP9	YER098W	AIM22	P47051	409 aa		4.83	□□□□□ -1.64
UBP9	YER098W	POP6	P53218	158 aa		4.83	□□□□□ -1.64
UBP9	YER098W	TIM44	Q01852	431 aa		4.83	□□□□□ -1.64
UBP9	YER098W	YPL062W	Q02781	134 aa		4.83	□□□□□ -1.64
UBP9	YER098W	YOL073C	Q08232	322 aa		4.83	□□□□□ -1.64
UBP9	YER098W	RPS10A	Q08745	105 aa	Predicted RBP	4.83	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 9.1 ms