RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 CDK5RAP1Q96SZ6 601 aaKnown RBP5.9□□□□□ -1.46
LINC00540-201ENST00000611481 NGRNQ9NPE2 291 aaKnown RBP5.9□□□□□ -1.46
LINC00540-201ENST00000611481 CDHR2Q9BYE9 1310 aa5.9□□□□□ -1.47
LINC00540-201ENST00000611481 LAMA2P24043 3122 aaKnown RBP5.89□□□□□ -1.47
LINC00540-201ENST00000611481 UNCXA6NJT0 531 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 UBE2Q2LH0YL09 131 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 SGSM2O43147 1006 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 RAD17O75943 681 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 SLPIP03973 132 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 ALDH1B1P30837 517 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 ACVRL1P37023 503 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 CDSNQ15517 529 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 USP51Q70EK9 711 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 STK32CQ86UX6 486 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 FAM177A1Q8N128 213 aaPredicted RBP5.89□□□□□ -1.47
LINC00540-201ENST00000611481 Q8N1X5 172 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 SH3TC2Q8TF17 1288 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 SEC14L1Q92503 715 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 GDF15Q99988 308 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 SLC12A5Q9H2X9 1139 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 MARCH2Q9P0N8 246 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 PPP4R1LQ9P1A2 415 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 SUGT1Q9Y2Z0 365 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 WASHC2AQ641Q2 1341 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 MUC6Q6W4X9 2439 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 EYSQ5T1H1 3165 aa5.89□□□□□ -1.47
LINC00540-201ENST00000611481 B4GALT3O60512 393 aa5.88□□□□□ -1.47
LINC00540-201ENST00000611481 FZD7O75084 574 aa5.88□□□□□ -1.47
LINC00540-201ENST00000611481 HSP90AB1P08238 724 aaKnown RBP5.88□□□□□ -1.47
LINC00540-201ENST00000611481 COL9A2Q14055 689 aaPredicted RBP5.88□□□□□ -1.47
LINC00540-201ENST00000611481 LDLRAD1Q5T700 205 aa5.88□□□□□ -1.47
LINC00540-201ENST00000611481 ZFPM1Q8IX07 1006 aa5.88□□□□□ -1.47
LINC00540-201ENST00000611481 TDHQ8IZJ6 230 aa5.88□□□□□ -1.47
LINC00540-201ENST00000611481 C19orf47Q8N9M1 422 aaKnown RBP5.88□□□□□ -1.47
LINC00540-201ENST00000611481 MMP19Q99542 508 aa5.88□□□□□ -1.47
LINC00540-201ENST00000611481 KLC2Q9H0B6 622 aa5.88□□□□□ -1.47
LINC00540-201ENST00000611481 CLEC1BQ9P126 229 aa5.88□□□□□ -1.47
LINC00540-201ENST00000611481 PCDHB10Q9UN67 800 aa5.88□□□□□ -1.47
LINC00540-201ENST00000611481 PRUNE2Q8WUY3 3088 aa5.88□□□□□ -1.47
LINC00540-201ENST00000611481 NPEPPSL1A6NEC2 478 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 TCERG1O14776 1098 aaKnown RBP5.87□□□□□ -1.47
LINC00540-201ENST00000611481 PLS3P13797 630 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 SLC6A11P48066 632 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 MRE11P49959 708 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 FKBP1BP68106 108 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 ICAM4Q14773 271 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 TNIP1Q15025 636 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 PRAMEF18Q5VWM3 479 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 MBLAC2Q68D91 279 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 UBE2Q1Q7Z7E8 422 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 NBPF5PQ86XG9 351 aaPredicted RBP5.87□□□□□ -1.47
LINC00540-201ENST00000611481 FAM126BQ8IXS8 530 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 CDX2Q99626 313 aaPredicted RBP5.87□□□□□ -1.47
LINC00540-201ENST00000611481 MENTQ9BUN1 341 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 C1QTNF1Q9BXJ1 281 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 TERF2IPQ9NYB0 399 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 GGA3Q9NZ52 723 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 ZMYND8Q9ULU4 1186 aaPredicted RBP5.87□□□□□ -1.47
LINC00540-201ENST00000611481 FLT4P35916 1363 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 NCAPD2Q15021 1401 aa5.87□□□□□ -1.47
LINC00540-201ENST00000611481 ASTN2O75129 1339 aaPredicted RBP5.86□□□□□ -1.47
LINC00540-201ENST00000611481 KLRG2A4D1S0 409 aaPredicted RBP5.86□□□□□ -1.47
LINC00540-201ENST00000611481 C22orf46C9J442 243 aa5.86□□□□□ -1.47
LINC00540-201ENST00000611481 CYP1A1P04798 512 aaPredicted RBP5.86□□□□□ -1.47
LINC00540-201ENST00000611481 THBDP07204 575 aa5.86□□□□□ -1.47
LINC00540-201ENST00000611481 ZNF28P17035 718 aa5.86□□□□□ -1.47
LINC00540-201ENST00000611481 EIF5P55010 431 aaKnown RBP5.86□□□□□ -1.47
LINC00540-201ENST00000611481 SP3Q02447 781 aa5.86□□□□□ -1.47
LINC00540-201ENST00000611481 ZNF394Q53GI3 561 aa5.86□□□□□ -1.47
LINC00540-201ENST00000611481 FAM109BQ6ICB4 259 aaPredicted RBP5.86□□□□□ -1.47
LINC00540-201ENST00000611481 CCDC81Q6ZN84 652 aa5.86□□□□□ -1.47
LINC00540-201ENST00000611481 MILR1Q7Z6M3 343 aa5.86□□□□□ -1.47
LINC00540-201ENST00000611481 CIR1Q86X95 450 aaPredicted RBP5.86□□□□□ -1.47
LINC00540-201ENST00000611481 TEX2Q8IWB9 1127 aa5.86□□□□□ -1.47
LINC00540-201ENST00000611481 COPS5Q92905 334 aa5.86□□□□□ -1.47
LINC00540-201ENST00000611481 ZNF747Q9BV97 191 aa5.86□□□□□ -1.47
LINC00540-201ENST00000611481 VPS11Q9H270 941 aa5.86□□□□□ -1.47
LINC00540-201ENST00000611481 SLITRK6Q9H5Y7 841 aa5.86□□□□□ -1.47
LINC00540-201ENST00000611481 CD248Q9HCU0 757 aa5.86□□□□□ -1.47
LINC00540-201ENST00000611481 AKT3Q9Y243 479 aa5.86□□□□□ -1.47
LINC00540-201ENST00000611481 PCDHGB7Q9Y5F8 929 aa5.86□□□□□ -1.47
LINC00540-201ENST00000611481 NCOR1O75376 2440 aa5.86□□□□□ -1.47
LINC00540-201ENST00000611481 SCN7AQ01118 1682 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 ST20-MTHFSA0A0A6YYL1 179 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 A0A1W2PQH9 124 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 PRAMEF22A3QJZ6 481 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 STAT5AP42229 794 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 MTHFSP49914 203 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 NKX3-2P78367 333 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 CRHR2Q13324 411 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 MROH9Q5TGP6 573 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 POMZP3Q6PJE2 187 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 DNERQ8NFT8 737 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 OR6P1Q8NGX9 317 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 KLHL6Q8WZ60 621 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 YIPF4Q9BSR8 244 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 LRFN3Q9BTN0 628 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 TMEM168Q9H0V1 697 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 DEF6Q9H4E7 631 aa5.85□□□□□ -1.47
LINC00540-201ENST00000611481 L2HGDHQ9H9P8 463 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms