RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 TLR10Q9BXR5 811 aa14.84□□□□□ -0.03
NEK3-205ENST00000610828 ANKEF1Q9NU02 776 aa14.84□□□□□ -0.03
NEK3-205ENST00000610828 HOXC10Q9NYD6 342 aa14.84□□□□□ -0.03
NEK3-205ENST00000610828 GABBR1Q9UBS5 961 aa14.84□□□□□ -0.03
NEK3-205ENST00000610828 NAGPAQ9UK23 515 aa14.84□□□□□ -0.03
NEK3-205ENST00000610828 DNAJC12Q9UKB3 198 aa14.84□□□□□ -0.03
NEK3-205ENST00000610828 CCDC169A6NNP5 214 aa14.84□□□□□ -0.03
NEK3-205ENST00000610828 SPDYE16A6NNV3 312 aaPredicted RBP14.84□□□□□ -0.03
NEK3-205ENST00000610828 ATP2A1O14983 1001 aa14.84□□□□□ -0.03
NEK3-205ENST00000610828 RGS20O76081 388 aa14.84□□□□□ -0.03
NEK3-205ENST00000610828 C10orf76Q5T2E6 689 aa14.84□□□□□ -0.03
NEK3-205ENST00000610828 CCDC181Q5TID7 509 aa14.84□□□□□ -0.03
NEK3-205ENST00000610828 INTS8Q75QN2 995 aaKnown RBP14.84□□□□□ -0.03
NEK3-205ENST00000610828 DNAAF5Q86Y56 855 aa14.84□□□□□ -0.03
NEK3-205ENST00000610828 RDM1Q8NG50 284 aa14.84□□□□□ -0.03
NEK3-205ENST00000610828 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.84□□□□□ -0.03
NEK3-205ENST00000610828 INTS2Q9H0H0 1204 aaKnown RBP14.84□□□□□ -0.03
NEK3-205ENST00000610828 KIAA1217Q5T5P2 1943 aa14.84□□□□□ -0.03
NEK3-205ENST00000610828 F8VZ95 297 aa14.83□□□□□ -0.03
NEK3-205ENST00000610828 EVI5O60447 810 aa14.83□□□□□ -0.03
NEK3-205ENST00000610828 SORBS3O60504 671 aa14.83□□□□□ -0.03
NEK3-205ENST00000610828 FTCDO95954 541 aa14.83□□□□□ -0.03
NEK3-205ENST00000610828 KCNA2P16389 499 aa14.83□□□□□ -0.03
NEK3-205ENST00000610828 FERP16591 822 aa14.83□□□□□ -0.03
NEK3-205ENST00000610828 LMNB1P20700 586 aa14.83□□□□□ -0.03
NEK3-205ENST00000610828 DNA2P51530 1060 aa14.83□□□□□ -0.03
NEK3-205ENST00000610828 DLG4P78352 724 aa14.83□□□□□ -0.03
NEK3-205ENST00000610828 WDR93Q6P2C0 686 aa14.83□□□□□ -0.03
NEK3-205ENST00000610828 DLK2Q6UY11 383 aa14.83□□□□□ -0.03
NEK3-205ENST00000610828 SUGCTQ9HAC7 445 aa14.83□□□□□ -0.03
NEK3-205ENST00000610828 HSPBP1Q9NZL4 362 aa14.83□□□□□ -0.03
NEK3-205ENST00000610828 APEX2Q9UBZ4 518 aa14.83□□□□□ -0.03
NEK3-205ENST00000610828 POLR2AP24928 1970 aaKnown RBP14.83□□□□□ -0.04
NEK3-205ENST00000610828 TULP1O00294 542 aaPredicted RBP14.83□□□□□ -0.04
NEK3-205ENST00000610828 SOX5P35711 763 aa14.83□□□□□ -0.04
NEK3-205ENST00000610828 NCKAP1LP55160 1127 aa14.83□□□□□ -0.04
NEK3-205ENST00000610828 DRAP1Q14919 205 aaPredicted RBP14.83□□□□□ -0.04
NEK3-205ENST00000610828 NOL9Q5SY16 702 aaKnown RBP14.83□□□□□ -0.04
NEK3-205ENST00000610828 OTUD6AQ7L8S5 288 aa14.83□□□□□ -0.04
NEK3-205ENST00000610828 XXYLT1Q8NBI6 393 aa14.83□□□□□ -0.04
NEK3-205ENST00000610828 CEP170P1Q96L14 293 aa14.83□□□□□ -0.04
NEK3-205ENST00000610828 KIFC3Q9BVG8 833 aa14.83□□□□□ -0.04
NEK3-205ENST00000610828 STK33Q9BYT3 514 aa14.83□□□□□ -0.04
NEK3-205ENST00000610828 ST6GALNAC4Q9H4F1 302 aa14.83□□□□□ -0.04
NEK3-205ENST00000610828 JPH1Q9HDC5 661 aaPredicted RBP14.83□□□□□ -0.04
NEK3-205ENST00000610828 TSKSQ9UJT2 592 aa14.83□□□□□ -0.04
NEK3-205ENST00000610828 TELO2Q9Y4R8 837 aa14.83□□□□□ -0.04
NEK3-205ENST00000610828 PCDHGC5Q9Y5F6 944 aa14.83□□□□□ -0.04
NEK3-205ENST00000610828 EMSYQ7Z589 1322 aa14.83□□□□□ -0.04
NEK3-205ENST00000610828 ZNF862O60290 1169 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 USP2O75604 605 aaPredicted RBP14.82□□□□□ -0.04
NEK3-205ENST00000610828 VAMP7P51809 220 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 SMTNP53814 917 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 DMP1Q13316 513 aaPredicted RBP14.82□□□□□ -0.04
NEK3-205ENST00000610828 SWSAP1Q6NVH7 229 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 ZSWIM2Q8NEG5 633 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 ATP6V0A1Q93050 837 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 IWS1Q96ST2 819 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 SENP7Q9BQF6 1050 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 SMARCAL1Q9NZC9 954 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 EHD2Q9NZN4 543 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 PSAPP07602 524 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 MATR3P43243 847 aaKnown RBP eCLIP14.82□□□□□ -0.04
NEK3-205ENST00000610828 SOX10P56693 466 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 VGLL4Q14135 290 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 ARHGAP44Q17R89 818 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 GNPTABQ3T906 1256 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 HDXQ7Z353 690 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 C12orf56Q8IXR9 622 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 SLC17A8Q8NDX2 589 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 SPATA4Q8NEY3 305 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 CDHR1Q96JP9 859 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 SLC9A2Q9UBY0 812 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 L1RE1Q9UN81 338 aa14.82□□□□□ -0.04
NEK3-205ENST00000610828 DOCK5Q9H7D0 1870 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 TARSL2A2RTX5 802 aaKnown RBP14.81□□□□□ -0.04
NEK3-205ENST00000610828 ZMYND10O75800 440 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 MCM3P25205 808 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 ANXA13P27216 316 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 PAFAH1B1P43034 410 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 NOP2P46087 812 aaKnown RBP14.81□□□□□ -0.04
NEK3-205ENST00000610828 NPTX2P47972 431 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.81□□□□□ -0.04
NEK3-205ENST00000610828 PACSIN2Q9UNF0 486 aaPredicted RBP14.81□□□□□ -0.04
NEK3-205ENST00000610828 GRID2IPA4D2P6 1211 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 GOLGA8IPA6NC78 632 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 GOLGA8JA6NMD2 632 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 BTNL10A8MVZ5 291 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 DDX3XO00571 662 aaKnown RBP eCLIP14.81□□□□□ -0.042e-8■□□□□ 8.3
NEK3-205ENST00000610828 MAP2K7O14733 419 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 GCLMP48507 274 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 PPP3CAQ08209 521 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 CETN1Q12798 172 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 SMC1AQ14683 1233 aaKnown RBP14.81□□□□□ -0.04
NEK3-205ENST00000610828 PHLDB3Q6NSJ2 640 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 CCDC70Q6NSX1 233 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 ZNF572Q7Z3I7 529 aaPredicted RBP14.81□□□□□ -0.04
NEK3-205ENST00000610828 CCDC60Q8IWA6 550 aaPredicted RBP14.81□□□□□ -0.04
NEK3-205ENST00000610828 TMEM161BQ8NDZ6 487 aa14.81□□□□□ -0.04
NEK3-205ENST00000610828 U2AF1L4Q8WU68 220 aaKnown RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms