RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 MORC4Q8TE76 937 aa21.85■■□□□ 1.09
UPF1-207ENST00000599848 PDCD6IPQ8WUM4 868 aaKnown RBP21.85■■□□□ 1.09
UPF1-207ENST00000599848 UPF3AQ9H1J1 476 aaKnown RBP21.85■■□□□ 1.09
UPF1-207ENST00000599848 KRT38O76015 456 aa21.84■■□□□ 1.09
UPF1-207ENST00000599848 HSP90AA5PQ58FG0 334 aa21.84■■□□□ 1.09
UPF1-207ENST00000599848 MRPL40Q9NQ50 206 aaKnown RBP21.84■■□□□ 1.09
UPF1-207ENST00000599848 HMGCS2P54868 508 aa21.84■■□□□ 1.09
UPF1-207ENST00000599848 CACNB1Q02641 598 aaPredicted RBP21.84■■□□□ 1.09
UPF1-207ENST00000599848 GLE1Q53GS7 698 aaKnown RBP21.84■■□□□ 1.09
UPF1-207ENST00000599848 EPAS1Q99814 870 aa21.84■■□□□ 1.09
UPF1-207ENST00000599848 JPH1Q9HDC5 661 aaPredicted RBP21.84■■□□□ 1.09
UPF1-207ENST00000599848 DDX56Q9NY93 547 aaKnown RBP21.84■■□□□ 1.09
UPF1-207ENST00000599848 XKR3Q5GH77 459 aa21.84■■□□□ 1.09
UPF1-207ENST00000599848 MTBPQ96DY7 904 aa21.84■■□□□ 1.09
UPF1-207ENST00000599848 ZC3H4Q9UPT8 1303 aaKnown RBP21.84■■□□□ 1.09
UPF1-207ENST00000599848 CACNB3P54284 484 aa21.84■■□□□ 1.09
UPF1-207ENST00000599848 ARL4CP56559 192 aa21.84■■□□□ 1.09
UPF1-207ENST00000599848 CAV1Q03135 178 aa21.84■■□□□ 1.09
UPF1-207ENST00000599848 NEDD1Q8NHV4 660 aa21.84■■□□□ 1.09
UPF1-207ENST00000599848 SPDL1Q96EA4 605 aa21.84■■□□□ 1.09
UPF1-207ENST00000599848 PRAMEF22A3QJZ6 481 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 CARNS1A5YM72 827 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 PYGBP11216 843 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 IL1RL1Q01638 556 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 IMPG1Q17R60 797 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 MUM1Q2TAK8 710 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 FAF2Q96CS3 445 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 KIF12Q96FN5 646 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 NDST4Q9H3R1 872 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 STN1Q9H668 368 aaKnown RBP21.83■■□□□ 1.09
UPF1-207ENST00000599848 PTPN22Q9Y2R2 807 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 GOLGA8IPA6NC78 632 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 TMED2Q15363 201 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 SPON2Q9BUD6 331 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 ANTXR1Q9H6X2 564 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 UNC13AQ9UPW8 1703 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 CYP27B1O15528 508 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 RFC5P40937 340 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 PPP6R3Q5H9R7 873 aaPredicted RBP21.83■■□□□ 1.09
UPF1-207ENST00000599848 UCMAQ8WVF2 138 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 SEPT1Q8WYJ6 367 aa21.83■■□□□ 1.09
UPF1-207ENST00000599848 PIN4Q9Y237 131 aaKnown RBP21.83■■□□□ 1.09
UPF1-207ENST00000599848 MAFGO15525 162 aa21.83■■□□□ 1.08
UPF1-207ENST00000599848 CDC25BP30305 580 aa21.83■■□□□ 1.08
UPF1-207ENST00000599848 EIF3BP55884 814 aaKnown RBP21.83■■□□□ 1.08
UPF1-207ENST00000599848 CYP27A1Q02318 531 aa21.83■■□□□ 1.08
UPF1-207ENST00000599848 ADAT2Q7Z6V5 191 aaKnown RBP21.83■■□□□ 1.08
UPF1-207ENST00000599848 DDX53Q86TM3 631 aaKnown RBP21.83■■□□□ 1.08
UPF1-207ENST00000599848 FAM133AQ8N9E0 248 aa21.83■■□□□ 1.08
UPF1-207ENST00000599848 PYROXD1Q8WU10 500 aa21.83■■□□□ 1.08
UPF1-207ENST00000599848 M0QYV0 167 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 ETF1P62495 437 aaKnown RBP21.82■■□□□ 1.08
UPF1-207ENST00000599848 CDO1Q16878 200 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 AGBL3Q8NEM8 1001 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 OSBPL5Q9H0X9 879 aaPredicted RBP21.82■■□□□ 1.08
UPF1-207ENST00000599848 NEUROG2Q9H2A3 272 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 GCC2Q8IWJ2 1684 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 HSPH1Q92598 858 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 OPTNQ96CV9 577 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 INTS9Q9NV88 658 aaKnown RBP21.82■■□□□ 1.08
UPF1-207ENST00000599848 PACSIN2Q9UNF0 486 aaPredicted RBP21.82■■□□□ 1.08
UPF1-207ENST00000599848 MAGI3Q5TCQ9 1506 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 PODXLO00592 558 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 PRRG1O14668 218 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 SMIM24O75264 130 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 OCRLQ01968 901 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 EIF2AQ9BY44 585 aaKnown RBP21.82■■□□□ 1.08
UPF1-207ENST00000599848 TUFT1Q9NNX1 390 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 DNAJC17Q9NVM6 304 aaKnown RBP21.82■■□□□ 1.08
UPF1-207ENST00000599848 HGSO14964 777 aaPredicted RBP21.82■■□□□ 1.08
UPF1-207ENST00000599848 TRIM28Q13263 835 aaKnown RBP21.82■■□□□ 1.08
UPF1-207ENST00000599848 HHIPL2Q6UWX4 724 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 GPD1LQ8N335 351 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 DDX27Q96GQ7 796 aaKnown RBP21.82■■□□□ 1.08
UPF1-207ENST00000599848 CNOT10Q9H9A5 744 aaKnown RBP21.82■■□□□ 1.08
UPF1-207ENST00000599848 EPHB4P54760 987 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 BFSP2Q13515 415 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 BBS9Q3SYG4 887 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 ARHGAP18Q8N392 663 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 KCTD17Q8N5Z5 321 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 ZWILCHQ9H900 591 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 SH3BP1Q9Y3L3 701 aa21.82■■□□□ 1.08
UPF1-207ENST00000599848 CCDC188H7C350 402 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 CELF2O95319 508 aaKnown RBP21.81■■□□□ 1.08
UPF1-207ENST00000599848 U2AF2P26368 475 aaKnown RBP eCLIP21.81■■□□□ 1.082e-8■■■□□ 17.4
UPF1-207ENST00000599848 GUCY2DQ02846 1103 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 TEX2Q8IWB9 1127 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 HOXC6P09630 235 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 MX2P20592 715 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 PCSK1P29120 753 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 LDHDQ86WU2 507 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 SCFD2Q8WU76 684 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 PLEKHF1Q96S99 279 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 KDM4CQ9H3R0 1056 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 BFARQ9NZS9 450 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 HACD3Q9P035 362 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 IP6K2Q9UHH9 426 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 RPS6KA5O75582 802 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 FAM151AQ8WW52 585 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 DCP1AQ9NPI6 582 aaPredicted RBP21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms