RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 A0A087WZ62 844 aa16.86■□□□□ 0.29
TRIM28-205ENST00000595028 ZBTB39O15060 712 aa16.86■□□□□ 0.29
TRIM28-205ENST00000595028 GAS2O43903 313 aaKnown RBP16.86■□□□□ 0.29
TRIM28-205ENST00000595028 IBSPP21815 317 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-205ENST00000595028 CTNNB1P35222 781 aa16.86■□□□□ 0.29
TRIM28-205ENST00000595028 TOB1P50616 345 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-205ENST00000595028 CLP1Q92989 425 aaKnown RBP16.86■□□□□ 0.29
TRIM28-205ENST00000595028 NLRP4Q96MN2 994 aa16.86■□□□□ 0.29
TRIM28-205ENST00000595028 FDXACB1Q9BRP7 624 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-205ENST00000595028 ANKEF1Q9NU02 776 aa16.86■□□□□ 0.29
TRIM28-205ENST00000595028 RNF216Q9NWF9 866 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-205ENST00000595028 SMC3Q9UQE7 1217 aa16.86■□□□□ 0.29
TRIM28-205ENST00000595028 COL4A3BPQ9Y5P4 624 aa16.86■□□□□ 0.29
TRIM28-205ENST00000595028 MYO7AQ13402 2215 aa16.85■□□□□ 0.29
TRIM28-205ENST00000595028 USP34Q70CQ2 3546 aa16.85■□□□□ 0.29
TRIM28-205ENST00000595028 H3BNC9 293 aa16.85■□□□□ 0.29
TRIM28-205ENST00000595028 FGFR4P22455 802 aa16.85■□□□□ 0.29
TRIM28-205ENST00000595028 SFPQP23246 707 aaKnown RBP eCLIP16.85■□□□□ 0.29
TRIM28-205ENST00000595028 GATMP50440 423 aa16.85■□□□□ 0.29
TRIM28-205ENST00000595028 KSR1Q8IVT5 923 aa16.85■□□□□ 0.29
TRIM28-205ENST00000595028 PSPC1Q8WXF1 523 aaKnown RBP16.85■□□□□ 0.29
TRIM28-205ENST00000595028 TMEM143Q96AN5 459 aa16.85■□□□□ 0.29
TRIM28-205ENST00000595028 CCDC43Q96MW1 224 aaKnown RBP16.85■□□□□ 0.29
TRIM28-205ENST00000595028 TUFT1Q9NNX1 390 aa16.85■□□□□ 0.29
TRIM28-205ENST00000595028 XPNPEP1Q9NQW7 623 aa16.85■□□□□ 0.29
TRIM28-205ENST00000595028 TMEM161AQ9NX61 479 aa16.85■□□□□ 0.29
TRIM28-205ENST00000595028 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.85■□□□□ 0.29
TRIM28-205ENST00000595028 PCDHB7Q9Y5E2 793 aa16.85■□□□□ 0.29
TRIM28-205ENST00000595028 MRPL42Q9Y6G3 142 aaKnown RBP16.85■□□□□ 0.29
TRIM28-205ENST00000595028 C5orf67F2Z3F1 127 aa16.84■□□□□ 0.29
TRIM28-205ENST00000595028 H3BQV1 296 aa16.84■□□□□ 0.29
TRIM28-205ENST00000595028 CSDE1O75534 798 aaKnown RBP16.84■□□□□ 0.29
TRIM28-205ENST00000595028 SPATA31C1P0DKV0 1188 aa16.84■□□□□ 0.29
TRIM28-205ENST00000595028 ZSCAN20P17040 1043 aaPredicted RBP16.84■□□□□ 0.29
TRIM28-205ENST00000595028 TECP42680 631 aa16.84■□□□□ 0.29
TRIM28-205ENST00000595028 RARRES1P49788 294 aa16.84■□□□□ 0.29
TRIM28-205ENST00000595028 FAM189BP81408 668 aa16.84■□□□□ 0.29
TRIM28-205ENST00000595028 GPM6BQ13491 265 aa16.84■□□□□ 0.29
TRIM28-205ENST00000595028 PAN2Q504Q3 1202 aaKnown RBP16.84■□□□□ 0.29
TRIM28-205ENST00000595028 MCTP1Q6DN14 999 aa16.84■□□□□ 0.29
TRIM28-205ENST00000595028 C4orf32Q8N8J7 132 aa16.84■□□□□ 0.29
TRIM28-205ENST00000595028 ERMNQ8TAM6 284 aa16.84■□□□□ 0.29
TRIM28-205ENST00000595028 TCP11Q8WWU5 503 aa16.84■□□□□ 0.29
TRIM28-205ENST00000595028 PRPF31Q8WWY3 499 aaKnown RBP16.84■□□□□ 0.29
TRIM28-205ENST00000595028 MTRQ99707 1265 aa16.84■□□□□ 0.29
TRIM28-205ENST00000595028 POLR3CQ9BUI4 534 aaPredicted RBP16.84■□□□□ 0.29
TRIM28-205ENST00000595028 INO80BQ9C086 356 aaPredicted RBP16.84■□□□□ 0.29
TRIM28-205ENST00000595028 ELAC1Q9H777 363 aaKnown RBP16.84■□□□□ 0.29
TRIM28-205ENST00000595028 ATP6V0A4Q9HBG4 840 aa16.84■□□□□ 0.29
TRIM28-205ENST00000595028 PCDHB6Q9Y5E3 794 aa16.84■□□□□ 0.29
TRIM28-205ENST00000595028 TRIOO75962 3097 aa16.84■□□□□ 0.29
TRIM28-205ENST00000595028 MED24O75448 989 aa16.83■□□□□ 0.28
TRIM28-205ENST00000595028 DGAT1O75907 488 aa16.83■□□□□ 0.28
TRIM28-205ENST00000595028 RB1P06400 928 aa16.83■□□□□ 0.28
TRIM28-205ENST00000595028 BMPR1AP36894 532 aa16.83■□□□□ 0.28
TRIM28-205ENST00000595028 FXR2P51116 673 aaKnown RBP eCLIP16.83■□□□□ 0.284e-12■■■□□ 16.4
TRIM28-205ENST00000595028 CUL4AQ13619 759 aa16.83■□□□□ 0.28
TRIM28-205ENST00000595028 HAUS3Q68CZ6 603 aa16.83■□□□□ 0.28
TRIM28-205ENST00000595028 CATSPER3Q86XQ3 398 aa16.83■□□□□ 0.28
TRIM28-205ENST00000595028 GJD3Q8N144 294 aa16.83■□□□□ 0.28
TRIM28-205ENST00000595028 PIGOQ8TEQ8 1089 aa16.83■□□□□ 0.28
TRIM28-205ENST00000595028 MRPL38Q96DV4 380 aaKnown RBP16.83■□□□□ 0.28
TRIM28-205ENST00000595028 C11orf84Q9BUA3 381 aaPredicted RBP16.83■□□□□ 0.28
TRIM28-205ENST00000595028 IFT122Q9HBG6 1241 aa16.83■□□□□ 0.28
TRIM28-205ENST00000595028 GTF3C3Q9Y5Q9 886 aa16.83■□□□□ 0.28
TRIM28-205ENST00000595028 TBKBP1A7MCY6 615 aa16.82■□□□□ 0.28
TRIM28-205ENST00000595028 XRCC6P12956 609 aaKnown RBP eCLIP16.82■□□□□ 0.28
TRIM28-205ENST00000595028 LAMTOR4Q0VGL1 99 aa16.82■□□□□ 0.28
TRIM28-205ENST00000595028 PTGDRQ13258 359 aa16.82■□□□□ 0.28
TRIM28-205ENST00000595028 PTPROQ16827 1216 aa16.82■□□□□ 0.28
TRIM28-205ENST00000595028 TIGD5Q53EQ6 642 aa16.82■□□□□ 0.28
TRIM28-205ENST00000595028 RILPL1Q5EBL4 403 aa16.82■□□□□ 0.28
TRIM28-205ENST00000595028 FAM102BQ5T8I3 360 aa16.82■□□□□ 0.28
TRIM28-205ENST00000595028 POTEGQ6S5H5 508 aa16.82■□□□□ 0.28
TRIM28-205ENST00000595028 FERMT3Q86UX7 667 aa16.82■□□□□ 0.28
TRIM28-205ENST00000595028 ECHDC2Q86YB7 292 aa16.82■□□□□ 0.28
TRIM28-205ENST00000595028 FAM178BQ8IXR5 827 aa16.82■□□□□ 0.28
TRIM28-205ENST00000595028 FBXL18Q96ME1 805 aa16.82■□□□□ 0.28
TRIM28-205ENST00000595028 PLVAPQ9BX97 442 aa16.82■□□□□ 0.28
TRIM28-205ENST00000595028 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.82■□□□□ 0.28
TRIM28-205ENST00000595028 CHST12Q9NRB3 414 aa16.82■□□□□ 0.28
TRIM28-205ENST00000595028 DACT1Q9NYF0 836 aa16.82■□□□□ 0.28
TRIM28-205ENST00000595028 PIN4Q9Y237 131 aaKnown RBP16.82■□□□□ 0.28
TRIM28-205ENST00000595028 LAD1O00515 517 aa16.81■□□□□ 0.28
TRIM28-205ENST00000595028 ASAP2O43150 1006 aa16.81■□□□□ 0.28
TRIM28-205ENST00000595028 HOXA2O43364 376 aa16.81■□□□□ 0.28
TRIM28-205ENST00000595028 USO1O60763 962 aaKnown RBP16.81■□□□□ 0.28
TRIM28-205ENST00000595028 FGFR1P11362 822 aa16.81■□□□□ 0.28
TRIM28-205ENST00000595028 RPA1P27694 616 aa16.81■□□□□ 0.28
TRIM28-205ENST00000595028 CSPP1Q1MSJ5 1256 aa16.81■□□□□ 0.28
TRIM28-205ENST00000595028 CATSPER4Q7RTX7 472 aa16.81■□□□□ 0.28
TRIM28-205ENST00000595028 SRGAP1Q7Z6B7 1085 aa16.81■□□□□ 0.28
TRIM28-205ENST00000595028 RNF149Q8NC42 400 aa16.81■□□□□ 0.28
TRIM28-205ENST00000595028 TMEM117Q9H0C3 514 aa16.81■□□□□ 0.28
TRIM28-205ENST00000595028 LMAN2LQ9H0V9 348 aa16.81■□□□□ 0.28
TRIM28-205ENST00000595028 AGPAT5Q9NUQ2 364 aa16.81■□□□□ 0.28
TRIM28-205ENST00000595028 RNF19AQ9NV58 838 aa16.81■□□□□ 0.28
TRIM28-205ENST00000595028 DBR1Q9UK59 544 aaKnown RBP16.81■□□□□ 0.28
TRIM28-205ENST00000595028 PLXNA4Q9HCM2 1894 aa16.81■□□□□ 0.28
TRIM28-205ENST00000595028 CFAP54Q96N23 3096 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms