RNA–Protein interactions for RNA: ENST00000550692.1

BRF1-218, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, human

TSL 4

Gene BRF1, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRF1-218	ENST00000550692	SRGAP2C	P0DJJ0	459 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	XRCC6	P12956	609 aa	Known RBP eCLIP	12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	ZSCAN20	P17040	1043 aa	Predicted RBP	12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	POU3F3	P20264	500 aa	Predicted RBP	12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	RPA1	P27694	616 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	FXR2	P51116	673 aa	Known RBP eCLIP	12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	FAM189B	P81408	668 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	LAMTOR4	Q0VGL1	99 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	IL17A	Q16552	155 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	FAM102B	Q5T8I3	360 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	POTEG	Q6S5H5	508 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	FAM43B	Q6ZT52	329 aa	Predicted RBP	12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	FERMT3	Q86UX7	667 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	TMEM192	Q8IY95	271 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	FBXO22	Q8NEZ5	403 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	ERMN	Q8TAM6	284 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	PSPC1	Q8WXF1	523 aa	Known RBP	12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	IFT122	Q9HBG6	1241 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	PRDM6	Q9NQX0	595 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	ZDHHC9	Q9Y397	364 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	PCDHB7	Q9Y5E2	793 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	ATP6V1D	Q9Y5K8	247 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	TTC28	Q96AY4	2481 aa		12.53	□□□□□ -0.4
BRF1-218	ENST00000550692	COL4A4	P53420	1690 aa	Predicted RBP	12.52	□□□□□ -0.4
BRF1-218	ENST00000550692	GAS2	O43903	313 aa	Known RBP	12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	F13A1	P00488	732 aa		12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	PKP1	Q13835	747 aa		12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	ECM1	Q16610	540 aa		12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	PAN2	Q504Q3	1202 aa	Known RBP	12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	IGSF22	Q8N9C0	903 aa		12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	TCP11	Q8WWU5	503 aa		12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	CCDC43	Q96MW1	224 aa	Known RBP	12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	SAMD11	Q96NU1	681 aa		12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	NACC1	Q96RE7	527 aa		12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	INO80B	Q9C086	356 aa	Predicted RBP	12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	MINDY3	Q9H8M7	445 aa		12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	ATP6V0A4	Q9HBG4	840 aa		12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	TMEM161A	Q9NX61	479 aa		12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	LRWD1	Q9UFC0	647 aa		12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	MRPL42	Q9Y6G3	142 aa	Known RBP	12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	NLRC5	Q86WI3	1866 aa		12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	REV3L	O60673	3130 aa		12.52	□□□□□ -0.41
BRF1-218	ENST00000550692	PP2D1	A8MPX8	630 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	LAD1	O00515	517 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	ASAP2	O43150	1006 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	USO1	O60763	962 aa	Known RBP	12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	SFPQ	P23246	707 aa	Known RBP eCLIP	12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	CDC25A	P30304	524 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	CTNNB1	P35222	781 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	ARL2	P36404	184 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	BMPR1A	P36894	532 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	CCT6A	P40227	531 aa	Known RBP	12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	PRPH	P41219	470 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	ATP2C1	P98194	919 aa	Predicted RBP	12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	REST	Q13127	1097 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	GPM6B	Q13491	265 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	PDIA5	Q14554	519 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	FOXD4L5	Q5VV16	416 aa	Predicted RBP	12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	HAUS3	Q68CZ6	603 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	ATL3	Q6DD88	541 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	DTHD1	Q6ZMT9	781 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	MAEA	Q7L5Y9	396 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	CATSPER4	Q7RTX7	472 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	ECHDC2	Q86YB7	292 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	CMTR2	Q8IYT2	770 aa	Known RBP	12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	RNF149	Q8NC42	400 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	ASAP3	Q8TDY4	903 aa		12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	CLP1	Q92989	425 aa	Known RBP	12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	ELAC1	Q9H777	363 aa	Known RBP	12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	DBR1	Q9UK59	544 aa	Known RBP	12.51	□□□□□ -0.41
BRF1-218	ENST00000550692	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	12.51	□□□□□ -0.41
BRF1-218	ENST00000550692		A0A0U1RQF3	1178 aa		12.5	□□□□□ -0.41
BRF1-218	ENST00000550692	TBKBP1	A7MCY6	615 aa		12.5	□□□□□ -0.41
BRF1-218	ENST00000550692		H3BNC9	293 aa		12.5	□□□□□ -0.41
BRF1-218	ENST00000550692	FGFR1	P11362	822 aa		12.5	□□□□□ -0.41
BRF1-218	ENST00000550692	SRGAP1	Q7Z6B7	1085 aa		12.5	□□□□□ -0.41
BRF1-218	ENST00000550692	RNF169	Q8NCN4	708 aa		12.5	□□□□□ -0.41
BRF1-218	ENST00000550692	SNX29	Q8TEQ0	813 aa		12.5	□□□□□ -0.41
BRF1-218	ENST00000550692	ZNF396	Q96N95	335 aa	Predicted RBP	12.5	□□□□□ -0.41
BRF1-218	ENST00000550692	MMTAG2	Q9BU76	263 aa	Known RBP	12.5	□□□□□ -0.41
BRF1-218	ENST00000550692	RAB34	Q9BZG1	259 aa		12.5	□□□□□ -0.41
BRF1-218	ENST00000550692	GPRC5C	Q9NQ84	441 aa		12.5	□□□□□ -0.41
BRF1-218	ENST00000550692	CHST12	Q9NRB3	414 aa		12.5	□□□□□ -0.41
BRF1-218	ENST00000550692	RNF19A	Q9NV58	838 aa		12.5	□□□□□ -0.41
BRF1-218	ENST00000550692	HCST	Q9UBK5	93 aa		12.5	□□□□□ -0.41
BRF1-218	ENST00000550692	KIAA1024	Q9UPX6	916 aa		12.5	□□□□□ -0.41
BRF1-218	ENST00000550692	PIN4	Q9Y237	131 aa	Known RBP	12.5	□□□□□ -0.41
BRF1-218	ENST00000550692	RALGAPA2	Q2PPJ7	1873 aa		12.5	□□□□□ -0.41
BRF1-218	ENST00000550692	ARHGEF35	A5YM69	484 aa		12.49	□□□□□ -0.41
BRF1-218	ENST00000550692	C5orf67	F2Z3F1	127 aa		12.49	□□□□□ -0.41
BRF1-218	ENST00000550692	RB1	P06400	928 aa		12.49	□□□□□ -0.41
BRF1-218	ENST00000550692	ATF7	P17544	494 aa	Predicted RBP	12.49	□□□□□ -0.41
BRF1-218	ENST00000550692	MUT	P22033	750 aa		12.49	□□□□□ -0.41
BRF1-218	ENST00000550692	GLRA2	P23416	452 aa		12.49	□□□□□ -0.41
BRF1-218	ENST00000550692	PTEN	P60484	403 aa		12.49	□□□□□ -0.41
BRF1-218	ENST00000550692	CAPS	Q13938	189 aa		12.49	□□□□□ -0.41
BRF1-218	ENST00000550692	MXD4	Q14582	209 aa	Predicted RBP	12.49	□□□□□ -0.41
BRF1-218	ENST00000550692	TWF2	Q6IBS0	349 aa	Known RBP	12.49	□□□□□ -0.41
BRF1-218	ENST00000550692	PADI6	Q6TGC4	694 aa		12.49	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms