RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ZHX1Q9UKY1 873 aaPredicted RBP17.79■□□□□ 0.44
COL4A1-204ENST00000543140 PACSIN2Q9UNF0 486 aaPredicted RBP17.79■□□□□ 0.44
COL4A1-204ENST00000543140 PCDHA10Q9Y5I2 948 aa17.79■□□□□ 0.44
COL4A1-204ENST00000543140 CCDC169A6NNP5 214 aa17.79■□□□□ 0.44
COL4A1-204ENST00000543140 PPP2R5AQ15172 486 aa17.79■□□□□ 0.44
COL4A1-204ENST00000543140 ALKBH5Q6P6C2 394 aaKnown RBP17.79■□□□□ 0.44
COL4A1-204ENST00000543140 SLC9A9Q8IVB4 645 aa17.79■□□□□ 0.44
COL4A1-204ENST00000543140 RPGRIP1Q96KN7 1286 aa17.79■□□□□ 0.44
COL4A1-204ENST00000543140 INTS2Q9H0H0 1204 aaKnown RBP17.79■□□□□ 0.44
COL4A1-204ENST00000543140 CYP39A1Q9NYL5 469 aa17.79■□□□□ 0.44
COL4A1-204ENST00000543140 LRRN2O75325 713 aa17.78■□□□□ 0.44
COL4A1-204ENST00000543140 KRT13P13646 458 aa17.78■□□□□ 0.44
COL4A1-204ENST00000543140 TCP1P17987 556 aaKnown RBP17.78■□□□□ 0.44
COL4A1-204ENST00000543140 MRPS25P82663 173 aaKnown RBP17.78■□□□□ 0.44
COL4A1-204ENST00000543140 DRAP1Q14919 205 aaPredicted RBP17.78■□□□□ 0.44
COL4A1-204ENST00000543140 CCDC181Q5TID7 509 aa17.78■□□□□ 0.44
COL4A1-204ENST00000543140 MS4A14Q96JA4 679 aa17.78■□□□□ 0.44
COL4A1-204ENST00000543140 INPP4AQ96PE3 977 aaPredicted RBP17.78■□□□□ 0.44
COL4A1-204ENST00000543140 AFG3L2Q9Y4W6 797 aa17.78■□□□□ 0.44
COL4A1-204ENST00000543140 EVI5O60447 810 aa17.78■□□□□ 0.44
COL4A1-204ENST00000543140 PRLRP16471 622 aa17.78■□□□□ 0.44
COL4A1-204ENST00000543140 PRKCIP41743 596 aa17.78■□□□□ 0.44
COL4A1-204ENST00000543140 STAT1P42224 750 aa17.78■□□□□ 0.44
COL4A1-204ENST00000543140 OAZ1P54368 228 aa17.78■□□□□ 0.44
COL4A1-204ENST00000543140 ARHGAP44Q17R89 818 aa17.78■□□□□ 0.44
COL4A1-204ENST00000543140 SWSAP1Q6NVH7 229 aa17.78■□□□□ 0.44
COL4A1-204ENST00000543140 GPC2Q8N158 579 aa17.78■□□□□ 0.44
COL4A1-204ENST00000543140 FBXO41Q8TF61 875 aa17.78■□□□□ 0.44
COL4A1-204ENST00000543140 GPRASP2Q96D09 838 aa17.78■□□□□ 0.44
COL4A1-204ENST00000543140 GOLGA8IPA6NC78 632 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 GOLGA8JA6NMD2 632 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 SPDYE16A6NNV3 312 aaPredicted RBP17.77■□□□□ 0.44
COL4A1-204ENST00000543140 F8VZ95 297 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 ZNF862O60290 1169 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 MAPTP10636 758 aaKnown RBP17.77■□□□□ 0.44
COL4A1-204ENST00000543140 KCNA2P16389 499 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 PTPROQ16827 1216 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 ZNF746Q6NUN9 644 aaPredicted RBP17.77■□□□□ 0.44
COL4A1-204ENST00000543140 CNKSR2Q8WXI2 1034 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 GOLPH3Q9H4A6 298 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 ACAD9Q9H845 621 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.77■□□□□ 0.44
COL4A1-204ENST00000543140 HSPBP1Q9NZL4 362 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 L1RE1Q9UN81 338 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 EMSYQ7Z589 1322 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 POLR3GO15318 223 aaPredicted RBP17.77■□□□□ 0.44
COL4A1-204ENST00000543140 SOX5P35711 763 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 NOP2P46087 812 aaKnown RBP17.77■□□□□ 0.44
COL4A1-204ENST00000543140 GCLMP48507 274 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 GTF2BQ00403 316 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 ALCAMQ13740 583 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 SMC1AQ14683 1233 aaKnown RBP17.77■□□□□ 0.44
COL4A1-204ENST00000543140 WDR93Q6P2C0 686 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 XRRA1Q6P2D8 792 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 U2AF1L4Q8WU68 220 aaKnown RBP17.77■□□□□ 0.44
COL4A1-204ENST00000543140 CEP170P1Q96L14 293 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 STK33Q9BYT3 514 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 ANKEF1Q9NU02 776 aa17.77■□□□□ 0.44
COL4A1-204ENST00000543140 GRID2IPA4D2P6 1211 aa17.76■□□□□ 0.43
COL4A1-204ENST00000543140 DDX3XO00571 662 aaKnown RBP eCLIP17.76■□□□□ 0.43
COL4A1-204ENST00000543140 USP2O75604 605 aaPredicted RBP17.76■□□□□ 0.43
COL4A1-204ENST00000543140 FERP16591 822 aa17.76■□□□□ 0.43
COL4A1-204ENST00000543140 VAMP7P51809 220 aa17.76■□□□□ 0.43
COL4A1-204ENST00000543140 PPP3CAQ08209 521 aa17.76■□□□□ 0.43
COL4A1-204ENST00000543140 SUPT20HL1Q3ZLR7 823 aa17.76■□□□□ 0.43
COL4A1-204ENST00000543140 PHLDB3Q6NSJ2 640 aa17.76■□□□□ 0.43
COL4A1-204ENST00000543140 VPS36Q86VN1 386 aa17.76■□□□□ 0.43
COL4A1-204ENST00000543140 XXYLT1Q8NBI6 393 aa17.76■□□□□ 0.43
COL4A1-204ENST00000543140 SPATA4Q8NEY3 305 aa17.76■□□□□ 0.43
COL4A1-204ENST00000543140 ZCCHC17Q9NP64 241 aaKnown RBP17.76■□□□□ 0.43
COL4A1-204ENST00000543140 HOXC10Q9NYD6 342 aa17.76■□□□□ 0.43
COL4A1-204ENST00000543140 APEX2Q9UBZ4 518 aa17.76■□□□□ 0.43
COL4A1-204ENST00000543140 NPTX2P47972 431 aa17.76■□□□□ 0.43
COL4A1-204ENST00000543140 HDXQ7Z353 690 aa17.76■□□□□ 0.43
COL4A1-204ENST00000543140 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.76■□□□□ 0.43
COL4A1-204ENST00000543140 JPH1Q9HDC5 661 aaPredicted RBP17.76■□□□□ 0.43
COL4A1-204ENST00000543140 PCDHGC5Q9Y5F6 944 aa17.76■□□□□ 0.43
COL4A1-204ENST00000543140 TMCO5BA8MYB1 307 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 ANKRD63C9JTQ0 380 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 MAP2K7O14733 419 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 DDNO94850 711 aaPredicted RBP17.75■□□□□ 0.43
COL4A1-204ENST00000543140 FSTL1Q12841 308 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 VGLL4Q14135 290 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 TREML2Q5T2D2 321 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.75■□□□□ 0.43
COL4A1-204ENST00000543140 INTS8Q75QN2 995 aaKnown RBP17.75■□□□□ 0.43
COL4A1-204ENST00000543140 GLYCTKQ8IVS8 523 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 PLEKHO2Q8TD55 490 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 HDAC7Q8WUI4 952 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 BSNDQ8WZ55 320 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 GPR88Q9GZN0 384 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 NCKAP1LP55160 1127 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 RNASE9P60153 205 aaKnown RBP17.75■□□□□ 0.43
COL4A1-204ENST00000543140 CNTN2Q02246 1040 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 MYBPC2Q14324 1141 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 C10orf76Q5T2E6 689 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 GSPT2Q8IYD1 628 aaKnown RBP17.75■□□□□ 0.43
COL4A1-204ENST00000543140 TMEM161BQ8NDZ6 487 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 LMO3Q8TAP4 145 aa17.75■□□□□ 0.43
COL4A1-204ENST00000543140 SAAL1Q96ER3 474 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms