RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TTC1Q99614 292 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 STK33Q9BYT3 514 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 TMED5Q9Y3A6 229 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 CPS1P31327 1500 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 ATP7AQ04656 1500 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 GRIA2P42262 883 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 DNAJC3Q13217 504 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 MPP2Q14168 576 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 TAF1BQ53T94 588 aaPredicted RBP12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 RSPH1Q8WYR4 309 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 NAPBQ9H115 298 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 CROTQ9UKG9 612 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 PPP1R9AQ9ULJ8 1098 aa12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 FAF1Q9UNN5 650 aaPredicted RBP12.93□□□□□ -0.34
LIMCH1-213ENST00000511496 FAM208AQ9UK61 1670 aaKnown RBP12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 CCDC188H7C350 402 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 ATP9BO43861 1147 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 DKC1O60832 514 aaKnown RBP eCLIP12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 STK10O94804 968 aaKnown RBP12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 PTPN4P29074 926 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 MCM7P33993 719 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 MYBPC2Q14324 1141 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 RBM44Q6ZP01 1051 aaKnown RBP12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 ARPP21Q9UBL0 812 aaPredicted RBP12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 SPO11Q9Y5K1 396 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 A0A087X0T9 212 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 FGGP02679 453 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 FAM228BP0C875 321 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 PORP16435 677 aaPredicted RBP12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 TXKP42681 527 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 MTFR1Q15390 333 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 PKN1Q16512 942 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 FIGNQ5HY92 759 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 ACTRT1Q8TDG2 376 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 DQX1Q8TE96 717 aaKnown RBP12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 ZMAT2Q96NC0 199 aaKnown RBP12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 CADM1Q9BY67 442 aaKnown RBP12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 UBA5Q9GZZ9 404 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 COPRSQ9NQ92 184 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 CCDC61Q9Y6R9 512 aa12.92□□□□□ -0.34
LIMCH1-213ENST00000511496 WASLO00401 505 aaPredicted RBP12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 DDX3XO00571 662 aaKnown RBP eCLIP12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 TXNDC9O14530 226 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 ACSL3O95573 720 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 RXRGP48443 463 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 TCIRG1Q13488 830 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 PEX26Q7Z412 305 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 MIPEPQ99797 713 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 SLITRK6Q9H5Y7 841 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 SOS2Q07890 1332 aaPredicted RBP12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 COL6A2P12110 1019 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 IFNAR1P17181 557 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 SMARCA1P28370 1054 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 TMED10P49755 219 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 USP11P51784 963 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 GEMIN4P57678 1058 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 DR1Q01658 176 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 DSG1Q02413 1049 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 DMPKQ09013 629 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 TBL3Q12788 808 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 RTN1Q16799 776 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 ASTE1Q2TB18 679 aaPredicted RBP12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 USH1GQ495M9 461 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 FBXO31Q5XUX0 539 aaPredicted RBP12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 TMEM214Q6NUQ4 689 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 VSTM1Q6UX27 236 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 B3GNT6Q6ZMB0 384 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 TMCO5AQ8N6Q1 288 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 ERMNQ8TAM6 284 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 ZCRB1Q8TBF4 217 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 SPOCK2Q92563 424 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 P2RX5Q93086 422 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 TXLNGYQ9BZA5 131 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 SYNCQ9H7C4 482 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 SLCO1B3Q9NPD5 702 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 RIMS1Q86UR5 1692 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 KRT13P13646 458 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 IDO1P14902 403 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 RGS2P41220 211 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 RAPGEF1Q13905 1077 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 EXOC3L4Q17RC7 722 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 U2AF1L4Q8WU68 220 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 GAB3Q8WWW8 586 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 HPS3Q969F9 1004 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 NKIRAS1Q9NYS0 192 aa12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 IQSEC3Q9UPP2 1182 aaPredicted RBP12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 TMA7Q9Y2S6 64 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-213ENST00000511496 RGL2O15211 777 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 GYG2O15488 501 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 GPAA1O43292 621 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 IGKV5-2P06315 115 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 SERPINB8P50452 374 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 NAA20P61599 178 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 BTKQ06187 659 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 NEXNQ0ZGT2 675 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 TTC38Q5R3I4 469 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 PDXDC1Q6P996 788 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 IQCF2Q8IXL9 164 aa12.9□□□□□ -0.34
LIMCH1-213ENST00000511496 DGCR14Q96DF8 476 aaKnown RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms