RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 EPC2Q52LR7 807 aa20.79■□□□□ 0.92
USP39-209ENST00000458268 TWF2Q6IBS0 349 aaKnown RBP20.79■□□□□ 0.92
USP39-209ENST00000458268 TMEM192Q8IY95 271 aa20.79■□□□□ 0.92
USP39-209ENST00000458268 INO80BQ9C086 356 aaPredicted RBP20.79■□□□□ 0.92
USP39-209ENST00000458268 KIAA1024Q9UPX6 916 aa20.79■□□□□ 0.92
USP39-209ENST00000458268 CDH23Q9H251 3354 aa20.79■□□□□ 0.92
USP39-209ENST00000458268 FNDC1Q4ZHG4 1894 aaPredicted RBP20.78■□□□□ 0.92
USP39-209ENST00000458268 C9IYK1 514 aa20.78■□□□□ 0.92
USP39-209ENST00000458268 LAD1O00515 517 aa20.78■□□□□ 0.92
USP39-209ENST00000458268 GAS2O43903 313 aaKnown RBP20.78■□□□□ 0.92
USP39-209ENST00000458268 RPA1P27694 616 aa20.78■□□□□ 0.92
USP39-209ENST00000458268 DSC3Q14574 896 aa20.78■□□□□ 0.92
USP39-209ENST00000458268 IL17AQ16552 155 aa20.78■□□□□ 0.92
USP39-209ENST00000458268 FAM102BQ5T8I3 360 aa20.78■□□□□ 0.92
USP39-209ENST00000458268 KRT79Q5XKE5 535 aa20.78■□□□□ 0.92
USP39-209ENST00000458268 ASAP3Q8TDY4 903 aa20.78■□□□□ 0.92
USP39-209ENST00000458268 PLIN2Q99541 437 aa20.78■□□□□ 0.92
USP39-209ENST00000458268 GPRC5CQ9NQ84 441 aa20.78■□□□□ 0.92
USP39-209ENST00000458268 PRDM6Q9NQX0 595 aa20.78■□□□□ 0.92
USP39-209ENST00000458268 DDX19AQ9NUU7 478 aaKnown RBP20.78■□□□□ 0.92
USP39-209ENST00000458268 PRRC2BQ5JSZ5 2229 aaKnown RBP20.78■□□□□ 0.92
USP39-209ENST00000458268 SYT1P21579 422 aa20.77■□□□□ 0.92
USP39-209ENST00000458268 PHKA2P46019 1235 aa20.77■□□□□ 0.92
USP39-209ENST00000458268 ATP2C1P98194 919 aaPredicted RBP20.77■□□□□ 0.92
USP39-209ENST00000458268 GPM6BQ13491 265 aa20.77■□□□□ 0.92
USP39-209ENST00000458268 TFDP1Q14186 410 aa20.77■□□□□ 0.92
USP39-209ENST00000458268 ECM1Q16610 540 aa20.77■□□□□ 0.92
USP39-209ENST00000458268 FOXD4L5Q5VV16 416 aaPredicted RBP20.77■□□□□ 0.92
USP39-209ENST00000458268 BRAPQ7Z569 592 aa20.77■□□□□ 0.92
USP39-209ENST00000458268 FOXD4L4Q8WXT5 416 aaPredicted RBP20.77■□□□□ 0.92
USP39-209ENST00000458268 POLD4Q9HCU8 107 aa20.77■□□□□ 0.92
USP39-209ENST00000458268 MTCH2Q9Y6C9 303 aa20.77■□□□□ 0.92
USP39-209ENST00000458268 MRPL42Q9Y6G3 142 aaKnown RBP20.77■□□□□ 0.92
USP39-209ENST00000458268 LRRIQ4A6NIV6 560 aa20.76■□□□□ 0.91
USP39-209ENST00000458268 INO80B-WBP1J3KQ70 363 aa20.76■□□□□ 0.91
USP39-209ENST00000458268 ERLIN2O94905 339 aa20.76■□□□□ 0.91
USP39-209ENST00000458268 PRPHP41219 470 aa20.76■□□□□ 0.91
USP39-209ENST00000458268 CEBPZQ03701 1054 aaKnown RBP20.76■□□□□ 0.91
USP39-209ENST00000458268 FAM173BQ6P4H8 233 aa20.76■□□□□ 0.91
USP39-209ENST00000458268 PADI6Q6TGC4 694 aa20.76■□□□□ 0.91
USP39-209ENST00000458268 ABI1Q8IZP0 508 aa20.76■□□□□ 0.91
USP39-209ENST00000458268 IGSF22Q8N9C0 903 aa20.76■□□□□ 0.91
USP39-209ENST00000458268 ZNF689Q96CS4 500 aaPredicted RBP20.76■□□□□ 0.91
USP39-209ENST00000458268 INTS4Q96HW7 963 aaKnown RBP20.76■□□□□ 0.91
USP39-209ENST00000458268 CDK5RAP3Q96JB5 506 aa20.76■□□□□ 0.91
USP39-209ENST00000458268 SAMD11Q96NU1 681 aa20.76■□□□□ 0.91
USP39-209ENST00000458268 BHMT2Q9H2M3 363 aa20.76■□□□□ 0.91
USP39-209ENST00000458268 MINDY3Q9H8M7 445 aa20.76■□□□□ 0.91
USP39-209ENST00000458268 IFT122Q9HBG6 1241 aa20.76■□□□□ 0.91
USP39-209ENST00000458268 RNF216Q9NWF9 866 aaPredicted RBP20.76■□□□□ 0.91
USP39-209ENST00000458268 TMEM161AQ9NX61 479 aa20.76■□□□□ 0.91
USP39-209ENST00000458268 DBR1Q9UK59 544 aaKnown RBP20.76■□□□□ 0.91
USP39-209ENST00000458268 COL4A6Q14031 1691 aa20.76■□□□□ 0.91
USP39-209ENST00000458268 E9PMD0 336 aa20.75■□□□□ 0.91
USP39-209ENST00000458268 ASAP2O43150 1006 aa20.75■□□□□ 0.91
USP39-209ENST00000458268 SSBP05455 408 aaKnown RBP eCLIP20.75■□□□□ 0.91
USP39-209ENST00000458268 LIG1P18858 919 aa20.75■□□□□ 0.91
USP39-209ENST00000458268 CAPSQ13938 189 aa20.75■□□□□ 0.91
USP39-209ENST00000458268 PDIA5Q14554 519 aa20.75■□□□□ 0.91
USP39-209ENST00000458268 MXD4Q14582 209 aaPredicted RBP20.75■□□□□ 0.91
USP39-209ENST00000458268 SRGAP1Q7Z6B7 1085 aa20.75■□□□□ 0.91
USP39-209ENST00000458268 ECHDC2Q86YB7 292 aa20.75■□□□□ 0.91
USP39-209ENST00000458268 CMTR2Q8IYT2 770 aaKnown RBP20.75■□□□□ 0.91
USP39-209ENST00000458268 RC3H2Q9HBD1 1191 aaKnown RBP20.75■□□□□ 0.91
USP39-209ENST00000458268 DACT1Q9NYF0 836 aa20.75■□□□□ 0.91
USP39-209ENST00000458268 HCSTQ9UBK5 93 aa20.75■□□□□ 0.91
USP39-209ENST00000458268 CHD7Q9P2D1 2997 aa20.74■□□□□ 0.91
USP39-209ENST00000458268 LPXNO60711 386 aa20.74■□□□□ 0.91
USP39-209ENST00000458268 XRCC6P12956 609 aaKnown RBP eCLIP20.74■□□□□ 0.91
USP39-209ENST00000458268 GLRA2P23416 452 aa20.74■□□□□ 0.91
USP39-209ENST00000458268 SF3A1Q15459 793 aaKnown RBP20.74■□□□□ 0.91
USP39-209ENST00000458268 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.74■□□□□ 0.91
USP39-209ENST00000458268 RASSF8Q8NHQ8 419 aa20.74■□□□□ 0.91
USP39-209ENST00000458268 LPPQ93052 612 aa20.74■□□□□ 0.91
USP39-209ENST00000458268 SNX21Q969T3 373 aa20.74■□□□□ 0.91
USP39-209ENST00000458268 STK24Q9Y6E0 443 aa20.74■□□□□ 0.91
USP39-209ENST00000458268 BMPR1AP36894 532 aa20.73■□□□□ 0.91
USP39-209ENST00000458268 RESTQ13127 1097 aa20.73■□□□□ 0.91
USP39-209ENST00000458268 TMEM132AQ24JP5 1023 aa20.73■□□□□ 0.91
USP39-209ENST00000458268 MCPH1Q8NEM0 835 aa20.73■□□□□ 0.91
USP39-209ENST00000458268 HELQQ8TDG4 1101 aa20.73■□□□□ 0.91
USP39-209ENST00000458268 CPB2Q96IY4 423 aa20.73■□□□□ 0.91
USP39-209ENST00000458268 DNM3Q9UQ16 869 aa20.73■□□□□ 0.91
USP39-209ENST00000458268 INPP5FQ9Y2H2 1132 aa20.73■□□□□ 0.91
USP39-209ENST00000458268 RWDD3Q9Y3V2 267 aa20.73■□□□□ 0.91
USP39-209ENST00000458268 COL6A3P12111 3177 aa20.73■□□□□ 0.91
USP39-209ENST00000458268 STX6O43752 255 aa20.72■□□□□ 0.91
USP39-209ENST00000458268 ARL2P36404 184 aa20.72■□□□□ 0.91
USP39-209ENST00000458268 CRIPAKQ8N1N5 446 aa20.72■□□□□ 0.91
USP39-209ENST00000458268 ALG13Q9NP73 1137 aaKnown RBP20.72■□□□□ 0.91
USP39-209ENST00000458268 CHST12Q9NRB3 414 aa20.72■□□□□ 0.91
USP39-209ENST00000458268 CLIC4Q9Y696 253 aa20.72■□□□□ 0.91
USP39-209ENST00000458268 MYH15Q9Y2K3 1946 aa20.71■□□□□ 0.91
USP39-209ENST00000458268 H3BNC9 293 aa20.71■□□□□ 0.91
USP39-209ENST00000458268 HOXA2O43364 376 aa20.71■□□□□ 0.91
USP39-209ENST00000458268 PTENP60484 403 aa20.71■□□□□ 0.91
USP39-209ENST00000458268 PTPROQ16827 1216 aa20.71■□□□□ 0.91
USP39-209ENST00000458268 CABP7Q86V35 215 aa20.71■□□□□ 0.91
USP39-209ENST00000458268 MMTAG2Q9BU76 263 aaKnown RBP20.71■□□□□ 0.91
USP39-209ENST00000458268 C11orf84Q9BUA3 381 aaPredicted RBP20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms