RNA–Protein interactions for RNA: snR40

snR40, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR40, Length 97 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR40snR40 CSC1Q06538 782 aa1.09□□□□□ -2.23
snR40snR40 CDC19P00549 500 aaKnown RBP1.08□□□□□ -2.24
snR40snR40 RAD54P32863 898 aa1.08□□□□□ -2.24
snR40snR40 UBP14P38237 781 aaKnown RBP1.08□□□□□ -2.24
snR40snR40 YML122CQ03207 126 aa1.08□□□□□ -2.24
snR40snR40 SYT1Q06836 1226 aa1.08□□□□□ -2.24
snR40snR40 TPD3P31383 635 aa1.07□□□□□ -2.24
snR40snR40 TRM1P15565 570 aaKnown RBP1.06□□□□□ -2.24
snR40snR40 RAM2P29703 316 aa1.06□□□□□ -2.24
snR40snR40 PRY1P47032 299 aa1.06□□□□□ -2.24
snR40snR40 AGE1Q04412 482 aa1.06□□□□□ -2.24
snR40snR40 RNQ1P25367 405 aa1.05□□□□□ -2.24
snR40snR40 SSP1P38871 571 aa1.05□□□□□ -2.24
snR40snR40 ERF2Q06551 359 aa1.05□□□□□ -2.24
snR40snR40 ESC8Q08119 714 aa1.04□□□□□ -2.24
snR40snR40 KEX2P13134 814 aa1.03□□□□□ -2.24
snR40snR40 TUB4P53378 473 aa1.03□□□□□ -2.24
snR40snR40 SNM1P40993 198 aa1.02□□□□□ -2.25
snR40snR40 TAF1P46677 1066 aa1.02□□□□□ -2.25
snR40snR40 GPM1P00950 247 aaKnown RBP1.01□□□□□ -2.25
snR40snR40 LIP5P32875 414 aa1.01□□□□□ -2.25
snR40snR40 MET1P36150 593 aa1.01□□□□□ -2.25
snR40snR40 YKR073CP36153 106 aa1.01□□□□□ -2.25
snR40snR40 GIP4P39732 760 aa1.01□□□□□ -2.25
snR40snR40 VHR2P40041 505 aa1.01□□□□□ -2.25
snR40snR40 CTH1P47976 325 aa1.01□□□□□ -2.25
snR40snR40 YDR461C-AQ2V2P7 80 aa1.01□□□□□ -2.25
snR40snR40 NFS1P25374 497 aa1□□□□□ -2.25
snR40snR40 HXT10P43581 546 aa1□□□□□ -2.25
snR40snR40 MED7Q08278 222 aa1□□□□□ -2.25
snR40snR40 DIT1P21623 536 aa0.99□□□□□ -2.25
snR40snR40 KIP2P28743 706 aa0.99□□□□□ -2.25
snR40snR40 PGM1P33401 570 aaKnown RBP0.99□□□□□ -2.25
snR40snR40 KXD1P53158 218 aa0.99□□□□□ -2.25
snR40snR40 TRP3P00937 484 aa0.98□□□□□ -2.25
snR40snR40 PUB1P32588 453 aaKnown RBP RIP-Chip data0.98□□□□□ -2.25not detected
snR40snR40 YBL086CP38177 466 aa0.98□□□□□ -2.25
snR40snR40 NAF1P53919 492 aaKnown RBP0.98□□□□□ -2.25
snR40snR40 YMR265CQ03508 461 aaKnown RBP0.98□□□□□ -2.25
snR40snR40 KRE33P53914 1056 aaKnown RBP0.97□□□□□ -2.25
snR40snR40 HDA2Q06629 674 aa0.97□□□□□ -2.25
snR40snR40 IXR1P33417 597 aa0.96□□□□□ -2.26
snR40snR40 VTC4P47075 721 aa0.96□□□□□ -2.26
snR40snR40 BRE4Q07660 1125 aa0.96□□□□□ -2.26
snR40snR40 TOS1P38288 455 aa0.95□□□□□ -2.26
snR40snR40 NIT1P40447 199 aa0.94□□□□□ -2.26
snR40snR40 PDC1P06169 563 aaKnown RBP0.93□□□□□ -2.26
snR40snR40 YPR109WQ06104 294 aa0.92□□□□□ -2.26
snR40snR40 KNS1P32350 737 aaPredicted RBP0.91□□□□□ -2.26
snR40snR40 TPS3P38426 1054 aaKnown RBP0.91□□□□□ -2.26
snR40snR40 ORC6P38826 435 aa0.91□□□□□ -2.26
snR40snR40 MVP1P40959 511 aaKnown RBP0.91□□□□□ -2.26
snR40snR40 YDR090CQ03193 310 aa0.91□□□□□ -2.26
snR40snR40 MAG2Q06436 670 aaKnown RBP0.91□□□□□ -2.26
snR40snR40 SEG2P34250 1132 aa0.9□□□□□ -2.27
snR40snR40 BUD9P53226 547 aa0.9□□□□□ -2.27
snR40snR40 PDC5P16467 563 aaKnown RBP0.89□□□□□ -2.27
snR40snR40 KAE1P36132 386 aa0.89□□□□□ -2.27
snR40snR40 KIC1P38692 1080 aa0.89□□□□□ -2.27
snR40snR40 YNL115CP53925 644 aa0.89□□□□□ -2.27
snR40snR40 GSF2Q04697 403 aaKnown RBP0.89□□□□□ -2.27
snR40snR40 MMP1Q12372 583 aa0.89□□□□□ -2.27
snR40snR40 DAL1P32375 460 aa0.88□□□□□ -2.27
snR40snR40 UBP15P50101 1230 aa0.88□□□□□ -2.27
snR40snR40 YLR122CQ12312 125 aa0.87□□□□□ -2.27
snR40snR40 AI3P03877 415 aa0.86□□□□□ -2.27
snR40snR40 YGR130CP53278 816 aa0.86□□□□□ -2.27
snR40snR40 COQ2P32378 372 aa0.85□□□□□ -2.27
snR40snR40 RTF1P53064 558 aa0.85□□□□□ -2.27
snR40snR40 FPS1P23900 669 aa0.84□□□□□ -2.27
snR40snR40 LRG1P35688 1017 aa0.84□□□□□ -2.27
snR40snR40 ARI1P53111 347 aaKnown RBP0.84□□□□□ -2.27
snR40snR40 PRP43P53131 767 aaKnown RBP0.84□□□□□ -2.27
snR40snR40 RGR1P19263 1082 aa0.83□□□□□ -2.28
snR40snR40 FLR1P38124 548 aa0.83□□□□□ -2.28
snR40snR40 IFH1P39520 1085 aa0.83□□□□□ -2.28
snR40snR40 EMW1P42842 904 aaKnown RBP0.83□□□□□ -2.28
snR40snR40 SAC7P17121 654 aa0.82□□□□□ -2.28
snR40snR40 ECL1P48235 211 aa0.82□□□□□ -2.28
snR40snR40 THI80P35202 319 aa0.81□□□□□ -2.28
snR40snR40 ALR1Q08269 859 aa0.81□□□□□ -2.28
snR40snR40 GAS1P22146 559 aaKnown RBP0.8□□□□□ -2.28
snR40snR40 APP1P53933 587 aa0.8□□□□□ -2.28
snR40snR40 DFG5Q05031 458 aa0.8□□□□□ -2.28
snR40snR40 YPR097WQ06839 1073 aa0.8□□□□□ -2.28
snR40snR40 YLR358CO13565 187 aa0.79□□□□□ -2.28
snR40snR40 RPA14P50106 137 aa0.79□□□□□ -2.28
snR40snR40 PSH1Q12161 406 aa0.79□□□□□ -2.28
snR40snR40 MCM16Q12262 181 aa0.79□□□□□ -2.28
snR40snR40 PNS1Q12412 539 aa0.79□□□□□ -2.28
snR40snR40 CYC7P00045 113 aa0.78□□□□□ -2.28
snR40snR40 SLA1P32790 1244 aa0.78□□□□□ -2.28
snR40snR40 SEA4P38164 1038 aa0.78□□□□□ -2.28
snR40snR40 CDA2Q06703 312 aa0.78□□□□□ -2.28
snR40snR40 GAS5Q08193 484 aa0.78□□□□□ -2.28
snR40snR40 NHA1Q99271 985 aa0.78□□□□□ -2.28
snR40snR40 CHS2P14180 963 aa0.77□□□□□ -2.29
snR40snR40 NAB2P32505 525 aaKnown RBP RIP-Chip data0.77□□□□□ -2.29not detected
snR40snR40 ABZ1P37254 787 aaPredicted RBP0.77□□□□□ -2.29
snR40snR40 SLX1P38324 304 aa0.77□□□□□ -2.29
Retrieved 100 of 5,963 RNA–protein pairs in 33.8 ms