RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
EAR1YMR171C KXD1P53158 218 aa6.77□□□□□ -1.33
EAR1YMR171C MCM16Q12262 181 aa6.77□□□□□ -1.33
EAR1YMR171C SKI3P17883 1432 aaKnown RBP6.76□□□□□ -1.33
EAR1YMR171C THO2P53552 1597 aaKnown RBP6.76□□□□□ -1.33
EAR1YMR171C YPP1P46951 817 aa6.76□□□□□ -1.33
EAR1YMR171C GYP1Q08484 637 aa6.76□□□□□ -1.33
EAR1YMR171C SSA1P10591 642 aaKnown RBP6.74□□□□□ -1.33
EAR1YMR171C ISF1P32488 338 aa6.74□□□□□ -1.33
EAR1YMR171C FIG4P42837 879 aa6.74□□□□□ -1.33
EAR1YMR171C SAS4Q04003 481 aa6.74□□□□□ -1.33
EAR1YMR171C TEC1P18412 486 aa6.74□□□□□ -1.33
EAR1YMR171C HXT10P43581 546 aa6.74□□□□□ -1.33
EAR1YMR171C SIS2P36024 562 aa6.73□□□□□ -1.33
EAR1YMR171C EMP47P43555 445 aa6.73□□□□□ -1.33
EAR1YMR171C RDS2P19541 446 aaKnown RBP6.72□□□□□ -1.33
EAR1YMR171C YPR084WQ06821 456 aa6.72□□□□□ -1.33
EAR1YMR171C REV3P14284 1504 aa6.71□□□□□ -1.33
EAR1YMR171C MOD5P07884 428 aa6.71□□□□□ -1.33
EAR1YMR171C TPD3P31383 635 aa6.71□□□□□ -1.33
EAR1YMR171C SIN3P22579 1536 aa6.71□□□□□ -1.34
EAR1YMR171C RRD1P40454 393 aaKnown RBP6.71□□□□□ -1.34
EAR1YMR171C NOB1Q08444 459 aaKnown RBP6.71□□□□□ -1.34
EAR1YMR171C GUT2P32191 649 aa6.7□□□□□ -1.34
EAR1YMR171C PEP12P32854 288 aa6.7□□□□□ -1.34
EAR1YMR171C GEF1P37020 779 aa6.7□□□□□ -1.34
EAR1YMR171C VRP1P37370 817 aa6.7□□□□□ -1.34
EAR1YMR171C FRA1Q07825 749 aa6.7□□□□□ -1.34
EAR1YMR171C STE20Q03497 939 aaKnown RBP6.69□□□□□ -1.34
EAR1YMR171C PUP1P25043 261 aa6.68□□□□□ -1.34
EAR1YMR171C VAC17P25591 423 aa6.68□□□□□ -1.34
EAR1YMR171C SSK2P53599 1579 aa6.67□□□□□ -1.34
EAR1YMR171C SDH2P21801 266 aa6.67□□□□□ -1.34
EAR1YMR171C TGL4P36165 910 aa6.67□□□□□ -1.34
EAR1YMR171C YML083CQ04526 418 aa6.67□□□□□ -1.34
EAR1YMR171C ENV9Q08651 330 aa6.67□□□□□ -1.34
EAR1YMR171C MRF1P30775 413 aaPredicted RBP6.66□□□□□ -1.34
EAR1YMR171C MRX12P47084 519 aa6.66□□□□□ -1.34
EAR1YMR171C MYO2P19524 1574 aaKnown RBP6.66□□□□□ -1.34
EAR1YMR171C KTR7P40504 517 aa6.65□□□□□ -1.34
EAR1YMR171C CHD1P32657 1468 aa6.65□□□□□ -1.34
EAR1YMR171C APL6P46682 809 aa6.65□□□□□ -1.35
EAR1YMR171C ITT1Q04638 464 aa6.64□□□□□ -1.35
EAR1YMR171C BDP1P46678 594 aa6.63□□□□□ -1.35
EAR1YMR171C ESP1Q03018 1630 aa6.62□□□□□ -1.35
EAR1YMR171C BCK2P33306 851 aa6.62□□□□□ -1.35
EAR1YMR171C SOH1P38633 127 aa6.62□□□□□ -1.35
EAR1YMR171C ATG3P40344 310 aa6.62□□□□□ -1.35
EAR1YMR171C RPL34AP87262 121 aaPredicted RBP6.62□□□□□ -1.35
EAR1YMR171C ECM23Q02710 187 aa6.61□□□□□ -1.35
EAR1YMR171C PUS5Q06244 254 aa6.61□□□□□ -1.35
EAR1YMR171C TAF2P23255 1407 aa6.61□□□□□ -1.35
EAR1YMR171C MMS22Q06164 1454 aa6.61□□□□□ -1.35
EAR1YMR171C CST6P40535 587 aa6.61□□□□□ -1.35
EAR1YMR171C UTP13Q05946 817 aaKnown RBP6.61□□□□□ -1.35
EAR1YMR171C ECM5Q03214 1411 aa6.61□□□□□ -1.35
EAR1YMR171C KIP2P28743 706 aa6.6□□□□□ -1.35
EAR1YMR171C IXR1P33417 597 aa6.6□□□□□ -1.35
EAR1YMR171C FRK1Q03002 865 aaPredicted RBP6.6□□□□□ -1.35
EAR1YMR171C GAL2P13181 574 aa6.59□□□□□ -1.35
EAR1YMR171C SLX8P40072 274 aa6.58□□□□□ -1.36
EAR1YMR171C SYH1Q02875 849 aaKnown RBP6.58□□□□□ -1.36
EAR1YMR171C YEL077CQ3E7X8 1277 aa6.57□□□□□ -1.36
EAR1YMR171C UBX7P38349 436 aa6.56□□□□□ -1.36
EAR1YMR171C HAL5P38970 855 aaKnown RBP6.56□□□□□ -1.36
EAR1YMR171C XDJ1P39102 459 aa6.56□□□□□ -1.36
EAR1YMR171C YML020WQ03722 664 aa6.56□□□□□ -1.36
EAR1YMR171C ISR1Q06098 443 aaKnown RBP6.56□□□□□ -1.36
EAR1YMR171C PHO87P25360 923 aa6.55□□□□□ -1.36
EAR1YMR171C ATG20Q07528 640 aa6.55□□□□□ -1.36
EAR1YMR171C APP1P53933 587 aa6.55□□□□□ -1.36
EAR1YMR171C BUD4P47136 1447 aa6.55□□□□□ -1.36
EAR1YMR171C CDC3P32457 520 aaKnown RBP6.54□□□□□ -1.36
EAR1YMR171C EMW1P42842 904 aaKnown RBP6.54□□□□□ -1.36
EAR1YMR171C ACS2P52910 683 aaKnown RBP6.54□□□□□ -1.36
EAR1YMR171C HAP4P14064 554 aa6.52□□□□□ -1.37
EAR1YMR171C CBC2Q08920 208 aaKnown RBP RIP-Chip data6.52□□□□□ -1.37not detected
EAR1YMR171C TSC13Q99190 310 aa6.52□□□□□ -1.37
EAR1YMR171C STU1P38198 1513 aa6.52□□□□□ -1.37
EAR1YMR171C MIP1P15801 1254 aa6.52□□□□□ -1.37
EAR1YMR171C AMS1P22855 1083 aa6.52□□□□□ -1.37
EAR1YMR171C ROM1P53046 1155 aa6.52□□□□□ -1.37
EAR1YMR171C POL1P13382 1468 aa6.51□□□□□ -1.37
EAR1YMR171C PDI1P17967 522 aaKnown RBP6.51□□□□□ -1.37
EAR1YMR171C HDA3Q06623 655 aa6.51□□□□□ -1.37
EAR1YMR171C NOP8Q08287 484 aaPredicted RBP6.51□□□□□ -1.37
EAR1YMR171C MDS3P53094 1487 aa6.49□□□□□ -1.37
EAR1YMR171C MRT4P33201 236 aaKnown RBP6.49□□□□□ -1.37
EAR1YMR171C AIM9P40053 627 aaKnown RBP6.49□□□□□ -1.37
EAR1YMR171C GAS4Q08271 471 aa6.49□□□□□ -1.37
EAR1YMR171C YTA7P40340 1379 aa6.49□□□□□ -1.37
EAR1YMR171C MKS1P34072 584 aa6.49□□□□□ -1.37
EAR1YMR171C HED1Q03937 162 aa6.49□□□□□ -1.37
EAR1YMR171C ATG2P53855 1592 aa6.48□□□□□ -1.37
EAR1YMR171C FBP26P32604 452 aa6.48□□□□□ -1.37
EAR1YMR171C TPS3P38426 1054 aaKnown RBP6.48□□□□□ -1.37
EAR1YMR171C YFL034WP43564 1073 aa6.48□□□□□ -1.37
EAR1YMR171C CLA4P48562 842 aa6.48□□□□□ -1.37
EAR1YMR171C ISU1Q03020 165 aa6.48□□□□□ -1.37
EAR1YMR171C CWC15Q03772 175 aaKnown RBP6.47□□□□□ -1.37
EAR1YMR171C HAT1Q12341 374 aa6.47□□□□□ -1.37
Retrieved 100 of 5,963 RNA–protein pairs in 68.5 ms