RNA–Protein interactions for RNA: YJL029C

VPS53, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS53, Length 2,469 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS53YJL029C MHP1P43638 1398 aa4.8□□□□□ -1.64
VPS53YJL029C RPS24AP0CX31 135 aaKnown RBP4.79□□□□□ -1.64
VPS53YJL029C RPS24BP0CX32 135 aaKnown RBP4.79□□□□□ -1.64
VPS53YJL029C ENP1P38333 483 aaKnown RBP4.79□□□□□ -1.64
VPS53YJL029C SPP1Q03012 353 aa4.79□□□□□ -1.64
VPS53YJL029C SEC3P33332 1336 aaKnown RBP4.79□□□□□ -1.64
VPS53YJL029C UGA2P38067 497 aa4.79□□□□□ -1.64
VPS53YJL029C XKS1P42826 600 aa4.79□□□□□ -1.64
VPS53YJL029C RIM15P43565 1770 aa4.78□□□□□ -1.64
VPS53YJL029C RPN11P43588 306 aaKnown RBP4.78□□□□□ -1.64
VPS53YJL029C YJL181WP46987 611 aa4.78□□□□□ -1.64
VPS53YJL029C ALD2P47771 506 aa4.78□□□□□ -1.64
VPS53YJL029C YKL133CP36066 463 aa4.78□□□□□ -1.64
VPS53YJL029C NSR1P27476 414 aaKnown RBP RIP-Chip data4.77□□□□□ -1.65not detected
VPS53YJL029C YBL086CP38177 466 aa4.77□□□□□ -1.65
VPS53YJL029C ARP8Q12386 881 aaKnown RBP RIP-Chip data4.77□□□□□ -1.65not detected
VPS53YJL029C MST1P07236 462 aa4.76□□□□□ -1.65
VPS53YJL029C YKR075CP36155 307 aa4.76□□□□□ -1.65
VPS53YJL029C NPR2P39923 615 aa4.76□□□□□ -1.65
VPS53YJL029C YJL171CP46992 396 aa4.75□□□□□ -1.65
VPS53YJL029C SSA2P10592 639 aaKnown RBP4.74□□□□□ -1.65
VPS53YJL029C CTF4Q01454 927 aa4.74□□□□□ -1.65
VPS53YJL029C RPO41P13433 1351 aaKnown RBP4.74□□□□□ -1.65
VPS53YJL029C AUS1Q08409 1394 aa4.74□□□□□ -1.65
VPS53YJL029C COBP00163 385 aa4.74□□□□□ -1.65
VPS53YJL029C DPS1P04802 557 aaKnown RBP4.74□□□□□ -1.65
VPS53YJL029C LEO1P38439 464 aa4.74□□□□□ -1.65
VPS53YJL029C SSP1P38871 571 aa4.74□□□□□ -1.65
VPS53YJL029C YRF1-4O13559 1382 aa4.74□□□□□ -1.65
VPS53YJL029C VNX1P42839 908 aa4.73□□□□□ -1.65
VPS53YJL029C RCR1P38212 213 aa4.73□□□□□ -1.65
VPS53YJL029C POL5P39985 1022 aaKnown RBP4.73□□□□□ -1.65
VPS53YJL029C IOC4Q04213 475 aa4.73□□□□□ -1.65
VPS53YJL029C RTG3P38165 486 aa4.72□□□□□ -1.65
VPS53YJL029C CTH1P47976 325 aa4.72□□□□□ -1.65
VPS53YJL029C RAD4P14736 754 aa4.71□□□□□ -1.65
VPS53YJL029C GRX1P25373 110 aaKnown RBP4.71□□□□□ -1.65
VPS53YJL029C ALD3P54114 506 aa4.71□□□□□ -1.65
VPS53YJL029C LYS4P49367 693 aaPredicted RBP4.71□□□□□ -1.66
VPS53YJL029C PDS5Q04264 1277 aa4.71□□□□□ -1.66
VPS53YJL029C MSB4Q12317 492 aa4.71□□□□□ -1.66
VPS53YJL029C UTP22P53254 1237 aaPredicted RBP4.7□□□□□ -1.66
VPS53YJL029C ADE16P54113 591 aaKnown RBP4.7□□□□□ -1.66
VPS53YJL029C ORC1P54784 914 aaPredicted RBP4.7□□□□□ -1.66
VPS53YJL029C GAS4Q08271 471 aa4.7□□□□□ -1.66
VPS53YJL029C SSA1P10591 642 aaKnown RBP4.7□□□□□ -1.66
VPS53YJL029C TIF11P38912 153 aaKnown RBP4.7□□□□□ -1.66
VPS53YJL029C ATG13Q06628 738 aa4.7□□□□□ -1.66
VPS53YJL029C KAR2P16474 682 aaKnown RBP4.69□□□□□ -1.66
VPS53YJL029C FRK1Q03002 865 aaPredicted RBP4.69□□□□□ -1.66
VPS53YJL029C INP54Q08227 384 aaKnown RBP4.69□□□□□ -1.66
VPS53YJL029C BUG1Q12191 341 aa4.69□□□□□ -1.66
VPS53YJL029C MDG1P53885 366 aa4.68□□□□□ -1.66
VPS53YJL029C UTP10P42945 1769 aaKnown RBP4.67□□□□□ -1.66
VPS53YJL029C OSM1P21375 501 aaKnown RBP4.67□□□□□ -1.66
VPS53YJL029C YLR271WQ06152 274 aa4.67□□□□□ -1.66
VPS53YJL029C PIB1Q06651 286 aa4.67□□□□□ -1.66
VPS53YJL029C HIM1Q06674 414 aa4.67□□□□□ -1.66
VPS53YJL029C MRM1P25270 412 aa4.67□□□□□ -1.66
VPS53YJL029C DSD1P53095 428 aa4.67□□□□□ -1.66
VPS53YJL029C NUP145P49687 1317 aa4.66□□□□□ -1.66
VPS53YJL029C TOS1P38288 455 aa4.66□□□□□ -1.66
VPS53YJL029C GRE2Q12068 342 aaKnown RBP4.66□□□□□ -1.66
VPS53YJL029C LYS2P07702 1392 aa4.65□□□□□ -1.66
VPS53YJL029C ULI1P43604 169 aa4.65□□□□□ -1.66
VPS53YJL029C RPS9BP05755 195 aaKnown RBP4.65□□□□□ -1.67
VPS53YJL029C YFR016CP43597 1233 aaKnown RBP4.65□□□□□ -1.67
VPS53YJL029C SAP155P43612 1002 aa4.65□□□□□ -1.67
VPS53YJL029C AOS1Q06624 347 aa4.65□□□□□ -1.67
VPS53YJL029C AKL1P38080 1108 aaKnown RBP4.64□□□□□ -1.67
VPS53YJL029C YBP2P53169 641 aa4.64□□□□□ -1.67
VPS53YJL029C KCC4P25389 1037 aa4.63□□□□□ -1.67
VPS53YJL029C EAP1P36041 632 aaKnown RBP4.63□□□□□ -1.67
VPS53YJL029C UGA3P26370 528 aa4.63□□□□□ -1.67
VPS53YJL029C HSP104P31539 908 aaKnown RBP4.63□□□□□ -1.67
VPS53YJL029C RMT2Q03305 412 aa4.63□□□□□ -1.67
VPS53YJL029C CTT1P06115 562 aa4.62□□□□□ -1.67
VPS53YJL029C RRT14P40470 206 aa4.62□□□□□ -1.67
VPS53YJL029C PHM7Q12252 991 aa4.62□□□□□ -1.67
VPS53YJL029C NTH2P35172 780 aa4.62□□□□□ -1.67
VPS53YJL029C PSD2P53037 1138 aaKnown RBP4.62□□□□□ -1.67
VPS53YJL029C NST1P53935 1240 aa4.62□□□□□ -1.67
VPS53YJL029C YKL222CP35995 705 aa4.61□□□□□ -1.67
VPS53YJL029C BUB1P41695 1021 aaKnown RBP RIP-Chip data4.61□□□□□ -1.67not detected
VPS53YJL029C ERT1P38140 529 aa4.61□□□□□ -1.67
VPS53YJL029C PAP2P53632 584 aaKnown RBP4.61□□□□□ -1.67
VPS53YJL029C YNL050CP53952 270 aa4.61□□□□□ -1.67
VPS53YJL029C DIB1Q06819 143 aaPredicted RBP4.61□□□□□ -1.67
VPS53YJL029C NYV1Q12255 253 aa4.61□□□□□ -1.67
VPS53YJL029C BMT6Q12291 365 aa4.61□□□□□ -1.67
VPS53YJL029C LDB19Q12502 818 aa4.61□□□□□ -1.67
VPS53YJL029C SSP2Q08646 371 aa4.6□□□□□ -1.67
VPS53YJL029C TRK1P12685 1235 aa4.6□□□□□ -1.67
VPS53YJL029C TFG1P41895 735 aaPredicted RBP4.6□□□□□ -1.67
VPS53YJL029C NSE3Q05541 303 aa4.6□□□□□ -1.67
VPS53YJL029C NOP53Q12080 455 aaKnown RBP4.6□□□□□ -1.67
VPS53YJL029C SSK22P25390 1331 aaPredicted RBP4.59□□□□□ -1.67
VPS53YJL029C PFF1P38244 976 aa4.59□□□□□ -1.67
VPS53YJL029C MAM1P40065 302 aa4.59□□□□□ -1.67
VPS53YJL029C HPC2Q01448 625 aa4.59□□□□□ -1.67
Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms