RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C ATF2P53296 535 aa7.29□□□□□ -1.24
RTR1YER139C YJU3P28321 313 aa7.28□□□□□ -1.24
RTR1YER139C TRK2P28584 889 aa7.28□□□□□ -1.24
RTR1YER139C AAD14P42884 376 aa7.27□□□□□ -1.25
RTR1YER139C HPF1Q05164 967 aa7.27□□□□□ -1.25
RTR1YER139C YBL086CP38177 466 aa7.26□□□□□ -1.25
RTR1YER139C ARG82P07250 355 aa7.25□□□□□ -1.25
RTR1YER139C LSC2P53312 427 aa7.25□□□□□ -1.25
RTR1YER139C ITT1Q04638 464 aa7.25□□□□□ -1.25
RTR1YER139C GLC3P32775 704 aa7.24□□□□□ -1.25
RTR1YER139C APP1P53933 587 aa7.24□□□□□ -1.25
RTR1YER139C RSC30P38781 883 aa7.23□□□□□ -1.25
RTR1YER139C MTC5Q03897 1148 aa7.23□□□□□ -1.25
RTR1YER139C DLD1P32891 587 aa7.22□□□□□ -1.25
RTR1YER139C YJR098CP47139 656 aa7.22□□□□□ -1.25
RTR1YER139C YNR021WP53723 404 aaKnown RBP7.21□□□□□ -1.26
RTR1YER139C UBP2Q01476 1272 aa7.21□□□□□ -1.26
RTR1YER139C PKH3Q03306 898 aaPredicted RBP7.2□□□□□ -1.26
RTR1YER139C KTR1P27810 393 aaKnown RBP7.19□□□□□ -1.26
RTR1YER139C EMW1P42842 904 aaKnown RBP7.19□□□□□ -1.26
RTR1YER139C TCB1Q12466 1186 aa7.19□□□□□ -1.26
RTR1YER139C ROG3P43602 733 aa7.16□□□□□ -1.26
RTR1YER139C ARG8P18544 423 aa7.15□□□□□ -1.26
RTR1YER139C FIG4P42837 879 aa7.14□□□□□ -1.27
RTR1YER139C TY1A-MR1Q04215 440 aa7.13□□□□□ -1.27
RTR1YER139C MKS1P34072 584 aa7.12□□□□□ -1.27
RTR1YER139C OSH7P38755 437 aa7.12□□□□□ -1.27
RTR1YER139C DFG5Q05031 458 aa7.11□□□□□ -1.27
RTR1YER139C YPR204WQ08995 1032 aa7.11□□□□□ -1.27
RTR1YER139C CCP1P00431 361 aa7.1□□□□□ -1.27
RTR1YER139C AIM7Q12156 149 aa7.09□□□□□ -1.27
RTR1YER139C DPH6Q12429 685 aa7.08□□□□□ -1.28
RTR1YER139C CSN12P47130 423 aa7.07□□□□□ -1.28
RTR1YER139C TEC1P18412 486 aa7.06□□□□□ -1.28
RTR1YER139C RAD59Q12223 238 aa7.06□□□□□ -1.28
RTR1YER139C FBP26P32604 452 aa7.05□□□□□ -1.28
RTR1YER139C YPR084WQ06821 456 aa7.05□□□□□ -1.28
RTR1YER139C BDS1Q08347 646 aa7.05□□□□□ -1.28
RTR1YER139C ICP55P40051 511 aa7.04□□□□□ -1.28
RTR1YER139C LYS5P50113 272 aa7.03□□□□□ -1.28
RTR1YER139C NAM8Q00539 523 aaKnown RBP7.03□□□□□ -1.28
RTR1YER139C PUS1Q12211 544 aaKnown RBP7.03□□□□□ -1.28
RTR1YER139C CDC19P00549 500 aaKnown RBP7.02□□□□□ -1.29
RTR1YER139C JJJ3P47138 172 aa7.02□□□□□ -1.29
RTR1YER139C STE6P12866 1290 aa7□□□□□ -1.29
RTR1YER139C MDJ1P35191 511 aa6.99□□□□□ -1.29
RTR1YER139C LSB3P43603 459 aaKnown RBP6.98□□□□□ -1.29
RTR1YER139C PHM7Q12252 991 aa6.98□□□□□ -1.29
RTR1YER139C VTC4P47075 721 aa6.97□□□□□ -1.29
RTR1YER139C MAK16P10962 306 aaPredicted RBP6.95□□□□□ -1.3
RTR1YER139C GUT2P32191 649 aa6.95□□□□□ -1.3
RTR1YER139C ISU1Q03020 165 aa6.95□□□□□ -1.3
RTR1YER139C CUZ1P53899 274 aa6.94□□□□□ -1.3
RTR1YER139C ATG20Q07528 640 aa6.94□□□□□ -1.3
RTR1YER139C NSG2P53898 299 aa6.93□□□□□ -1.3
RTR1YER139C SSA2P10592 639 aaKnown RBP6.9□□□□□ -1.3
RTR1YER139C DAL1P32375 460 aa6.9□□□□□ -1.3
RTR1YER139C DLD3P39976 496 aaKnown RBP6.9□□□□□ -1.3
RTR1YER139C FRA1Q07825 749 aa6.9□□□□□ -1.3
RTR1YER139C NAF1P53919 492 aaKnown RBP6.89□□□□□ -1.31
RTR1YER139C CEM1P39525 442 aa6.88□□□□□ -1.31
RTR1YER139C YFL066CP43538 392 aa6.88□□□□□ -1.31
RTR1YER139C STE20Q03497 939 aaKnown RBP6.88□□□□□ -1.31
RTR1YER139C THI72Q08579 599 aa6.88□□□□□ -1.31
RTR1YER139C AI1P03875 834 aa6.87□□□□□ -1.31
RTR1YER139C RPP2BP02400 110 aaKnown RBP6.86□□□□□ -1.31
RTR1YER139C UBP15P50101 1230 aa6.84□□□□□ -1.31
RTR1YER139C KIN1P13185 1064 aa6.83□□□□□ -1.32
RTR1YER139C WTM2Q12206 467 aa6.83□□□□□ -1.32
RTR1YER139C TY1A-DR3Q12441 440 aa6.83□□□□□ -1.32
RTR1YER139C DIT1P21623 536 aa6.82□□□□□ -1.32
RTR1YER139C SSN3P39073 555 aa6.82□□□□□ -1.32
RTR1YER139C MSN5P52918 1224 aa6.82□□□□□ -1.32
RTR1YER139C YMR265CQ03508 461 aaKnown RBP6.82□□□□□ -1.32
RTR1YER139C SYT1Q06836 1226 aa6.82□□□□□ -1.32
RTR1YER139C SLA1P32790 1244 aa6.81□□□□□ -1.32
RTR1YER139C CCT8P47079 568 aaKnown RBP6.81□□□□□ -1.32
RTR1YER139C ISR1Q06098 443 aaKnown RBP6.81□□□□□ -1.32
RTR1YER139C ISF1P32488 338 aa6.8□□□□□ -1.32
RTR1YER139C ADE12P80210 433 aaKnown RBP6.8□□□□□ -1.32
RTR1YER139C EMP47P43555 445 aa6.79□□□□□ -1.32
RTR1YER139C APL6P46682 809 aa6.79□□□□□ -1.32
RTR1YER139C KRE33P53914 1056 aaKnown RBP6.79□□□□□ -1.32
RTR1YER139C YPR053CQ6Q5F3 151 aa6.79□□□□□ -1.32
RTR1YER139C SPT2P06843 333 aaPredicted RBP6.78□□□□□ -1.32
RTR1YER139C UTR2P32623 467 aa6.78□□□□□ -1.32
RTR1YER139C MCM16Q12262 181 aa6.78□□□□□ -1.32
RTR1YER139C DAT1P13483 248 aaKnown RBP6.77□□□□□ -1.33
RTR1YER139C SBE2P42223 864 aaKnown RBP6.77□□□□□ -1.33
RTR1YER139C YDR461C-AQ2V2P7 80 aa6.77□□□□□ -1.33
RTR1YER139C AHP1P38013 176 aaKnown RBP6.76□□□□□ -1.33
RTR1YER139C MRX12P47084 519 aa6.76□□□□□ -1.33
RTR1YER139C CSE4P36012 229 aa6.75□□□□□ -1.33
RTR1YER139C HAL5P38970 855 aaKnown RBP6.75□□□□□ -1.33
RTR1YER139C UTP7P40055 554 aaKnown RBP6.75□□□□□ -1.33
RTR1YER139C NRD1P53617 575 aaKnown RBP RIP-Chip data6.75□□□□□ -1.33not detected
RTR1YER139C TDA6Q06466 467 aa6.75□□□□□ -1.33
RTR1YER139C GUA1P38625 525 aaKnown RBP6.74□□□□□ -1.33
RTR1YER139C SPT5P27692 1063 aaKnown RBP6.72□□□□□ -1.33
RTR1YER139C TBS1P38114 1094 aa6.72□□□□□ -1.33
Retrieved 100 of 5,963 RNA–protein pairs in 14.1 ms