RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 SMARCA2P51531 1590 aa5.3□□□□□ -1.56
VPS35-209ENST00000568642 LAPTM4AQ15012 233 aa5.3□□□□□ -1.56
VPS35-209ENST00000568642 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.3□□□□□ -1.56
VPS35-209ENST00000568642 ZNF787Q6DD87 383 aa5.29□□□□□ -1.56
VPS35-209ENST00000568642 FBXO3Q9UK99 471 aa5.29□□□□□ -1.56
VPS35-209ENST00000568642 ITGBL1O95965 494 aaPredicted RBP5.28□□□□□ -1.56
VPS35-209ENST00000568642 WNT2BQ93097 391 aa5.28□□□□□ -1.56
VPS35-209ENST00000568642 KIF21AQ7Z4S6 1674 aa5.28□□□□□ -1.56
VPS35-209ENST00000568642 ARAP1Q96P48 1450 aa5.27□□□□□ -1.57
VPS35-209ENST00000568642 BHMG1C9JSJ3 638 aaPredicted RBP5.27□□□□□ -1.57
VPS35-209ENST00000568642 PPP4R3BQ5MIZ7 849 aa5.27□□□□□ -1.57
VPS35-209ENST00000568642 SPRYD3Q8NCJ5 442 aa5.27□□□□□ -1.57
VPS35-209ENST00000568642 FBXO22Q8NEZ5 403 aa5.27□□□□□ -1.57
VPS35-209ENST00000568642 NESP48681 1621 aa5.26□□□□□ -1.57
VPS35-209ENST00000568642 LOC105371045A0A1W2PR82 267 aa5.26□□□□□ -1.57
VPS35-209ENST00000568642 RGL2O15211 777 aa5.26□□□□□ -1.57
VPS35-209ENST00000568642 NBR1Q14596 966 aa5.26□□□□□ -1.57
VPS35-209ENST00000568642 LOC100996750A0A140TA64 210 aa5.25□□□□□ -1.57
VPS35-209ENST00000568642 BRPF1P55201 1214 aaPredicted RBP5.25□□□□□ -1.57
VPS35-209ENST00000568642 RNF25Q96BH1 459 aaPredicted RBP5.25□□□□□ -1.57
VPS35-209ENST00000568642 KRTAP4-6Q9BYQ5 205 aa5.25□□□□□ -1.57
VPS35-209ENST00000568642 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.24□□□□□ -1.57
VPS35-209ENST00000568642 ZFP91Q96JP5 570 aaPredicted RBP5.24□□□□□ -1.57
VPS35-209ENST00000568642 GOLGA8CPA6NN73 597 aa5.23□□□□□ -1.57
VPS35-209ENST00000568642 PTCD2Q8WV60 388 aaKnown RBP5.22□□□□□ -1.57
VPS35-209ENST00000568642 SLC4A5Q9BY07 1137 aa5.22□□□□□ -1.57
VPS35-209ENST00000568642 SYNJ2O15056 1496 aa5.21□□□□□ -1.58
VPS35-209ENST00000568642 NRG2O14511 850 aaPredicted RBP5.21□□□□□ -1.58
VPS35-209ENST00000568642 NLRP6P59044 892 aa5.21□□□□□ -1.58
VPS35-209ENST00000568642 MRPL50Q8N5N7 158 aaKnown RBP5.21□□□□□ -1.58
VPS35-209ENST00000568642 KCNH8Q96L42 1107 aa5.21□□□□□ -1.58
VPS35-209ENST00000568642 SPOCK2Q92563 424 aa5.2□□□□□ -1.58
VPS35-209ENST00000568642 TMC2Q8TDI7 906 aa5.19□□□□□ -1.58
VPS35-209ENST00000568642 ECM2O94769 699 aaPredicted RBP5.18□□□□□ -1.58
VPS35-209ENST00000568642 ZBED2Q9BTP6 218 aa5.18□□□□□ -1.58
VPS35-209ENST00000568642 MFRPQ9BY79 579 aa5.18□□□□□ -1.58
VPS35-209ENST00000568642 C1orf115Q9H7X2 142 aa5.18□□□□□ -1.58
VPS35-209ENST00000568642 KCNC4Q03721 635 aa5.17□□□□□ -1.58
VPS35-209ENST00000568642 RIOK3O14730 519 aaKnown RBP5.16□□□□□ -1.58
VPS35-209ENST00000568642 BCAMP50895 628 aa5.16□□□□□ -1.58
VPS35-209ENST00000568642 BCL2L12Q9HB09 334 aa5.16□□□□□ -1.58
VPS35-209ENST00000568642 LCE2AQ5TA79 106 aaPredicted RBP5.15□□□□□ -1.59
VPS35-209ENST00000568642 NECTIN2Q92692 538 aa5.15□□□□□ -1.59
VPS35-209ENST00000568642 PRKD2Q9BZL6 878 aa5.15□□□□□ -1.59
VPS35-209ENST00000568642 KIF13AQ9H1H9 1805 aa5.15□□□□□ -1.59
VPS35-209ENST00000568642 NKX1-1Q15270 411 aaPredicted RBP5.14□□□□□ -1.59
VPS35-209ENST00000568642 WDR62O43379 1518 aa5.13□□□□□ -1.59
VPS35-209ENST00000568642 POTECB2RU33 542 aa5.13□□□□□ -1.59
VPS35-209ENST00000568642 VGFO15240 615 aaPredicted RBP5.13□□□□□ -1.59
VPS35-209ENST00000568642 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.13□□□□□ -1.59
VPS35-209ENST00000568642 ZNF454Q8N9F8 522 aa5.13□□□□□ -1.59
VPS35-209ENST00000568642 NBPF3Q9H094 633 aa5.13□□□□□ -1.59
VPS35-209ENST00000568642 LAMC3Q9Y6N6 1575 aa5.12□□□□□ -1.59
VPS35-209ENST00000568642 SCRIBQ14160 1630 aa5.12□□□□□ -1.59
VPS35-209ENST00000568642 PTPREP23469 700 aa5.12□□□□□ -1.59
VPS35-209ENST00000568642 ANKK1Q8NFD2 765 aa5.12□□□□□ -1.59
VPS35-209ENST00000568642 WBP1LQ9NX94 342 aa5.12□□□□□ -1.59
VPS35-209ENST00000568642 PLPP6Q8IY26 295 aa5.11□□□□□ -1.59
VPS35-209ENST00000568642 BCL11BQ9C0K0 894 aaPredicted RBP5.11□□□□□ -1.59
VPS35-209ENST00000568642 ADGRL1O94910 1474 aa5.11□□□□□ -1.59
VPS35-209ENST00000568642 SOWAHBA6NEL2 793 aa5.1□□□□□ -1.59
VPS35-209ENST00000568642 GTPBP6O43824 516 aaPredicted RBP5.1□□□□□ -1.59
VPS35-209ENST00000568642 CHGAP10645 457 aaKnown RBP5.1□□□□□ -1.59
VPS35-209ENST00000568642 TREML4Q6UXN2 200 aa5.1□□□□□ -1.59
VPS35-209ENST00000568642 MRC2Q9UBG0 1479 aa5.1□□□□□ -1.59
VPS35-209ENST00000568642 PDZRN3Q9UPQ7 1066 aa5.1□□□□□ -1.59
VPS35-209ENST00000568642 CHD1O14646 1710 aa5.09□□□□□ -1.59
VPS35-209ENST00000568642 MYO15BQ96JP2 1530 aa5.09□□□□□ -1.59
VPS35-209ENST00000568642 RSF1Q96T23 1441 aaPredicted RBP5.09□□□□□ -1.59
VPS35-209ENST00000568642 IGSF3O75054 1194 aa5.09□□□□□ -1.59
VPS35-209ENST00000568642 PPP1R37O75864 691 aa5.09□□□□□ -1.59
VPS35-209ENST00000568642 FOXK1P85037 733 aa5.09□□□□□ -1.59
VPS35-209ENST00000568642 ZMYND15Q9H091 742 aa5.09□□□□□ -1.59
VPS35-209ENST00000568642 TBC1D12O60347 775 aa5.08□□□□□ -1.6
VPS35-209ENST00000568642 FOSBP53539 338 aa5.08□□□□□ -1.6
VPS35-209ENST00000568642 NYAP1Q6ZVC0 841 aa5.08□□□□□ -1.6
VPS35-209ENST00000568642 HS6ST3Q8IZP7 471 aa5.08□□□□□ -1.6
VPS35-209ENST00000568642 PDS5BQ9NTI5 1447 aa5.07□□□□□ -1.6
VPS35-209ENST00000568642 PROX2Q3B8N5 592 aa5.07□□□□□ -1.6
VPS35-209ENST00000568642 V9GY48 417 aaPredicted RBP5.07□□□□□ -1.6
VPS35-209ENST00000568642 KDM6BO15054 1643 aa5.07□□□□□ -1.6
VPS35-209ENST00000568642 TTBK1Q5TCY1 1321 aaPredicted RBP5.06□□□□□ -1.6
VPS35-209ENST00000568642 DSG2Q14126 1118 aa5.06□□□□□ -1.6
VPS35-209ENST00000568642 LMOD2Q6P5Q4 547 aa5.06□□□□□ -1.6
VPS35-209ENST00000568642 ADAM33Q9BZ11 813 aa5.06□□□□□ -1.6
VPS35-209ENST00000568642 RABGEF1Q9UJ41 708 aa5.06□□□□□ -1.6
VPS35-209ENST00000568642 STK24Q9Y6E0 443 aa5.06□□□□□ -1.6
VPS35-209ENST00000568642 PPP1R18Q6NYC8 613 aa5.04□□□□□ -1.6
VPS35-209ENST00000568642 OXER1Q8TDS5 423 aa5.04□□□□□ -1.6
VPS35-209ENST00000568642 UPF1Q92900 1129 aaKnown RBP eCLIP5.04□□□□□ -1.6
VPS35-209ENST00000568642 ZFRQ96KR1 1074 aaKnown RBP5.04□□□□□ -1.6
VPS35-209ENST00000568642 RSPH6AQ9H0K4 717 aa5.04□□□□□ -1.6
VPS35-209ENST00000568642 STK17AQ9UEE5 414 aa5.04□□□□□ -1.6
VPS35-209ENST00000568642 NCAPD3P42695 1498 aa5.04□□□□□ -1.6
VPS35-209ENST00000568642 MYT1Q01538 1121 aa5.03□□□□□ -1.6
VPS35-209ENST00000568642 ZC3H15Q8WU90 426 aaKnown RBP5.02□□□□□ -1.61
VPS35-209ENST00000568642 GPHNQ9NQX3 736 aaPredicted RBP5.02□□□□□ -1.61
VPS35-209ENST00000568642 COL9A1P20849 921 aa5.01□□□□□ -1.61
VPS35-209ENST00000568642 NEUROD2Q15784 382 aa5.01□□□□□ -1.61
VPS35-209ENST00000568642 TJAP1Q5JTD0 557 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 1730.1 ms