RNA–Protein interactions for RNA: ENST00000530906.1

PCF11-205, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 628 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-205ENST00000530906 CRISPLD2Q9H0B8 497 aa8.64□□□□□ -1.03
PCF11-205ENST00000530906 RYDENQ9NUL5 291 aaKnown RBP8.63□□□□□ -1.03
PCF11-205ENST00000530906 UBTFP17480 764 aaKnown RBP8.62□□□□□ -1.03
PCF11-205ENST00000530906 ZEB1P37275 1124 aaPredicted RBP8.62□□□□□ -1.03
PCF11-205ENST00000530906 ADGRD1Q6QNK2 874 aa8.62□□□□□ -1.03
PCF11-205ENST00000530906 OXER1Q8TDS5 423 aa8.62□□□□□ -1.03
PCF11-205ENST00000530906 TBC1D12O60347 775 aa8.61□□□□□ -1.03
PCF11-205ENST00000530906 DMRTA1Q5VZB9 504 aa8.61□□□□□ -1.03
PCF11-205ENST00000530906 CLIP1P30622 1438 aa8.61□□□□□ -1.03
PCF11-205ENST00000530906 DNMBPQ6XZF7 1577 aa8.61□□□□□ -1.03
PCF11-205ENST00000530906 FANCD2Q9BXW9 1451 aa8.6□□□□□ -1.03
PCF11-205ENST00000530906 PSEN2P49810 448 aa8.6□□□□□ -1.03
PCF11-205ENST00000530906 NCKAP5LQ9HCH0 1330 aa8.59□□□□□ -1.03
PCF11-205ENST00000530906 RAPGEF2Q9Y4G8 1499 aa8.59□□□□□ -1.03
PCF11-205ENST00000530906 TK2O00142 265 aa8.59□□□□□ -1.03
PCF11-205ENST00000530906 GTPBP6O43824 516 aaPredicted RBP8.59□□□□□ -1.03
PCF11-205ENST00000530906 PPP4R3BQ5MIZ7 849 aa8.59□□□□□ -1.03
PCF11-205ENST00000530906 VPS8Q8N3P4 1428 aa8.58□□□□□ -1.04
PCF11-205ENST00000530906 HRO43593 1189 aa8.58□□□□□ -1.04
PCF11-205ENST00000530906 PPP1R15BQ5SWA1 713 aa8.57□□□□□ -1.04
PCF11-205ENST00000530906 UPF1Q92900 1129 aaKnown RBP eCLIP8.57□□□□□ -1.04
PCF11-205ENST00000530906 FGD5Q6ZNL6 1462 aa8.57□□□□□ -1.04
PCF11-205ENST00000530906 PDS5BQ9NTI5 1447 aa8.55□□□□□ -1.04
PCF11-205ENST00000530906 ABCA10Q8WWZ4 1543 aa8.55□□□□□ -1.04
PCF11-205ENST00000530906 TOPBP1Q92547 1522 aa8.54□□□□□ -1.04
PCF11-205ENST00000530906 CUX2O14529 1486 aa8.54□□□□□ -1.04
PCF11-205ENST00000530906 PDE4AP27815 886 aa8.54□□□□□ -1.04
PCF11-205ENST00000530906 CUL7Q14999 1698 aa8.53□□□□□ -1.04
PCF11-205ENST00000530906 KCNK17Q96T54 332 aa8.53□□□□□ -1.04
PCF11-205ENST00000530906 HCSTQ9UBK5 93 aa8.53□□□□□ -1.04
PCF11-205ENST00000530906 ANO8Q9HCE9 1232 aaPredicted RBP8.52□□□□□ -1.05
PCF11-205ENST00000530906 IGF1RP08069 1367 aa8.51□□□□□ -1.05
PCF11-205ENST00000530906 FOSBP53539 338 aa8.51□□□□□ -1.05
PCF11-205ENST00000530906 POLA1P09884 1462 aaPredicted RBP8.51□□□□□ -1.05
PCF11-205ENST00000530906 WDR97A6NE52 1622 aa8.51□□□□□ -1.05
PCF11-205ENST00000530906 ZNF454Q8N9F8 522 aa8.5□□□□□ -1.05
PCF11-205ENST00000530906 LARP6Q9BRS8 491 aaKnown RBP8.5□□□□□ -1.05
PCF11-205ENST00000530906 BCL2L12Q9HB09 334 aa8.5□□□□□ -1.05
PCF11-205ENST00000530906 MFSD10Q14728 455 aa8.49□□□□□ -1.05
PCF11-205ENST00000530906 VPS9D1Q9Y2B5 631 aa8.49□□□□□ -1.05
PCF11-205ENST00000530906 CARMIL1Q5VZK9 1371 aa8.48□□□□□ -1.05
PCF11-205ENST00000530906 SLC4A5Q9BY07 1137 aa8.48□□□□□ -1.05
PCF11-205ENST00000530906 MAP3K1Q13233 1512 aa8.48□□□□□ -1.05
PCF11-205ENST00000530906 NESP48681 1621 aa8.47□□□□□ -1.05
PCF11-205ENST00000530906 ARAP1Q96P48 1450 aa8.47□□□□□ -1.05
PCF11-205ENST00000530906 EVI5O60447 810 aa8.47□□□□□ -1.05
PCF11-205ENST00000530906 DDX27Q96GQ7 796 aaKnown RBP8.47□□□□□ -1.05
PCF11-205ENST00000530906 KCNH8Q96L42 1107 aa8.47□□□□□ -1.05
PCF11-205ENST00000530906 PLA2G2EQ9NZK7 142 aa8.47□□□□□ -1.05
PCF11-205ENST00000530906 EFCAB5A4FU69 1503 aa8.46□□□□□ -1.05
PCF11-205ENST00000530906 URB2Q14146 1524 aaKnown RBP8.46□□□□□ -1.05
PCF11-205ENST00000530906 KCTD12Q96CX2 325 aaKnown RBP8.46□□□□□ -1.06
PCF11-205ENST00000530906 JPH4Q96JJ6 628 aa8.46□□□□□ -1.06
PCF11-205ENST00000530906 ABCA5Q8WWZ7 1642 aa8.46□□□□□ -1.06
PCF11-205ENST00000530906 CADPS2Q86UW7 1296 aa8.45□□□□□ -1.06
PCF11-205ENST00000530906 EMILIN3Q9NT22 766 aa8.45□□□□□ -1.06
PCF11-205ENST00000530906 BHMG1C9JSJ3 638 aaPredicted RBP8.44□□□□□ -1.06
PCF11-205ENST00000530906 FHAD1B1AJZ9 1412 aa8.44□□□□□ -1.06
PCF11-205ENST00000530906 ARHGAP35Q9NRY4 1499 aa8.44□□□□□ -1.06
PCF11-205ENST00000530906 KIF21AQ7Z4S6 1674 aa8.43□□□□□ -1.06
PCF11-205ENST00000530906 PTPREP23469 700 aa8.43□□□□□ -1.06
PCF11-205ENST00000530906 ZBED2Q9BTP6 218 aa8.43□□□□□ -1.06
PCF11-205ENST00000530906 ADAM33Q9BZ11 813 aa8.43□□□□□ -1.06
PCF11-205ENST00000530906 CTTNBP2Q8WZ74 1663 aa8.43□□□□□ -1.06
PCF11-205ENST00000530906 MAP3K9P80192 1104 aa8.42□□□□□ -1.06
PCF11-205ENST00000530906 ZDHHC16Q969W1 377 aa8.42□□□□□ -1.06
PCF11-205ENST00000530906 STAC3Q96MF2 364 aa8.42□□□□□ -1.06
PCF11-205ENST00000530906 MRC2Q9UBG0 1479 aa8.41□□□□□ -1.06
PCF11-205ENST00000530906 RAD54L2Q9Y4B4 1467 aa8.41□□□□□ -1.06
PCF11-205ENST00000530906 TARBP1Q13395 1621 aaKnown RBP8.4□□□□□ -1.06
PCF11-205ENST00000530906 AQRO60306 1485 aaKnown RBP eCLIP8.4□□□□□ -1.06
PCF11-205ENST00000530906 GAPVD1Q14C86 1478 aa8.39□□□□□ -1.07
PCF11-205ENST00000530906 PCDHGA10Q9Y5H3 936 aa8.39□□□□□ -1.07
PCF11-205ENST00000530906 WDR62O43379 1518 aa8.38□□□□□ -1.07
PCF11-205ENST00000530906 TIAM1Q13009 1591 aa8.37□□□□□ -1.07
PCF11-205ENST00000530906 CAMK2BQ13554 666 aa8.37□□□□□ -1.07
PCF11-205ENST00000530906 PPARGC1BQ86YN6 1023 aaKnown RBP8.37□□□□□ -1.07
PCF11-205ENST00000530906 FYCO1Q9BQS8 1478 aa8.37□□□□□ -1.07
PCF11-205ENST00000530906 RRBP1Q9P2E9 1410 aaKnown RBP8.37□□□□□ -1.07
PCF11-205ENST00000530906 CFAP43Q8NDM7 1665 aa8.37□□□□□ -1.07
PCF11-205ENST00000530906 THOC2Q8NI27 1593 aaKnown RBP8.36□□□□□ -1.07
PCF11-205ENST00000530906 PTPN5P54829 565 aa8.36□□□□□ -1.07
PCF11-205ENST00000530906 THSD4Q6ZMP0 1018 aa8.36□□□□□ -1.07
PCF11-205ENST00000530906 IFT140Q96RY7 1462 aa8.36□□□□□ -1.07
PCF11-205ENST00000530906 FMN1Q68DA7 1419 aa8.36□□□□□ -1.07
PCF11-205ENST00000530906 PBRM1Q86U86 1689 aa8.35□□□□□ -1.07
PCF11-205ENST00000530906 CCER1Q8TC90 406 aaPredicted RBP8.35□□□□□ -1.07
PCF11-205ENST00000530906 SAMD9Q5K651 1589 aa8.35□□□□□ -1.07
PCF11-205ENST00000530906 CLSPNQ9HAW4 1339 aa8.34□□□□□ -1.07
PCF11-205ENST00000530906 PPP1R3GB7ZBB8 358 aa8.34□□□□□ -1.07
PCF11-205ENST00000530906 COL9A1P20849 921 aa8.34□□□□□ -1.07
PCF11-205ENST00000530906 MRPL50Q8N5N7 158 aaKnown RBP8.34□□□□□ -1.07
PCF11-205ENST00000530906 CASKIN1Q8WXD9 1431 aa8.34□□□□□ -1.07
PCF11-205ENST00000530906 GRIN2BQ13224 1484 aa8.33□□□□□ -1.08
PCF11-205ENST00000530906 PHF14O94880 888 aa8.33□□□□□ -1.08
PCF11-205ENST00000530906 ADAMTS12P58397 1594 aa8.33□□□□□ -1.08
PCF11-205ENST00000530906 PROX2Q3B8N5 592 aa8.32□□□□□ -1.08
PCF11-205ENST00000530906 TYW1BQ6NUM6 668 aa8.32□□□□□ -1.08
PCF11-205ENST00000530906 WNT2BQ93097 391 aa8.32□□□□□ -1.08
PCF11-205ENST00000530906 FBXW7Q969H0 707 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms