RNA–Protein interactions for RNA: ENST00000530906.1

PCF11-205, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 628 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-205ENST00000530906 AEBP2Q6ZN18 517 aaPredicted RBP20.58■□□□□ 0.89
PCF11-205ENST00000530906 CHIC1Q5VXU3 224 aa19.51■□□□□ 0.71
PCF11-205ENST00000530906 SENP3Q9H4L4 574 aaPredicted RBP17.5■□□□□ 0.39
PCF11-205ENST00000530906 PHF23Q9BUL5 403 aaPredicted RBP17.29■□□□□ 0.36
PCF11-205ENST00000530906 FOXD1Q16676 465 aa16.35■□□□□ 0.21
PCF11-205ENST00000530906 PLPPR3Q6T4P5 718 aa15.55■□□□□ 0.08
PCF11-205ENST00000530906 PPP6R1Q9UPN7 881 aa15.3■□□□□ 0.04
PCF11-205ENST00000530906 MSH5O43196 834 aa15.26■□□□□ 0.03
PCF11-205ENST00000530906 ADRA2BP18089 450 aa15.23■□□□□ 0.03
PCF11-205ENST00000530906 PIAS4Q8N2W9 510 aaPredicted RBP15.23■□□□□ 0.03
PCF11-205ENST00000530906 POTEDQ86YR6 584 aa14.94□□□□□ -0.02
PCF11-205ENST00000530906 MAPK8IP2Q13387 824 aaPredicted RBP13.99□□□□□ -0.17
PCF11-205ENST00000530906 DMRT2Q9Y5R5 561 aa13.91□□□□□ -0.18
PCF11-205ENST00000530906 SCAF1Q9H7N4 1312 aaKnown RBP13.88□□□□□ -0.19
PCF11-205ENST00000530906 PPP4R3CPQ6ZMV5 832 aa13.64□□□□□ -0.23
PCF11-205ENST00000530906 HOXD11P31277 338 aaPredicted RBP13.4□□□□□ -0.26
PCF11-205ENST00000530906 CNKSR2Q8WXI2 1034 aa13.38□□□□□ -0.27
PCF11-205ENST00000530906 RNF216Q9NWF9 866 aaPredicted RBP13.27□□□□□ -0.29
PCF11-205ENST00000530906 DCAF8L1A6NGE4 600 aa13.26□□□□□ -0.29
PCF11-205ENST00000530906 CACNB1Q02641 598 aaPredicted RBP13.08□□□□□ -0.32
PCF11-205ENST00000530906 NCBP3Q53F19 620 aaKnown RBP13.08□□□□□ -0.32
PCF11-205ENST00000530906 RNF39Q9H2S5 420 aa13.05□□□□□ -0.32
PCF11-205ENST00000530906 NPM3O75607 178 aaKnown RBP12.94□□□□□ -0.34
PCF11-205ENST00000530906 DNAJC5BQ9UF47 199 aa12.94□□□□□ -0.34
PCF11-205ENST00000530906 C1QBPQ07021 282 aaKnown RBP12.84□□□□□ -0.35
PCF11-205ENST00000530906 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.7□□□□□ -0.38
PCF11-205ENST00000530906 KCNA4P22459 653 aa12.69□□□□□ -0.38
PCF11-205ENST00000530906 U3KPZ7 1027 aaPredicted RBP12.49□□□□□ -0.41
PCF11-205ENST00000530906 SLC4A2P04920 1241 aa12.39□□□□□ -0.43
PCF11-205ENST00000530906 SPINK5Q9NQ38 1064 aaPredicted RBP12.31□□□□□ -0.44
PCF11-205ENST00000530906 CAPN15O75808 1086 aa12.24□□□□□ -0.45
PCF11-205ENST00000530906 DSG3P32926 999 aa12.22□□□□□ -0.45
PCF11-205ENST00000530906 NISCHQ9Y2I1 1504 aa12.09□□□□□ -0.47
PCF11-205ENST00000530906 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.08□□□□□ -0.48
PCF11-205ENST00000530906 HNRNPUL2Q1KMD3 747 aaKnown RBP12.08□□□□□ -0.48
PCF11-205ENST00000530906 APLP2Q06481 763 aa12.06□□□□□ -0.48
PCF11-205ENST00000530906 TRHP20396 242 aaPredicted RBP12.04□□□□□ -0.48
PCF11-205ENST00000530906 SAMD1Q6SPF0 538 aaPredicted RBP12.02□□□□□ -0.49
PCF11-205ENST00000530906 ZNF219Q9P2Y4 722 aaPredicted RBP12.02□□□□□ -0.49
PCF11-205ENST00000530906 ABCB7O75027 752 aa11.96□□□□□ -0.49
PCF11-205ENST00000530906 MYCNP04198 464 aaPredicted RBP11.94□□□□□ -0.5
PCF11-205ENST00000530906 SLC4A1APQ9BWU0 796 aaKnown RBP11.94□□□□□ -0.5
PCF11-205ENST00000530906 FOXD4L1Q9NU39 408 aa11.82□□□□□ -0.52
PCF11-205ENST00000530906 POLA2Q14181 598 aa11.75□□□□□ -0.53
PCF11-205ENST00000530906 ATF5Q9Y2D1 282 aaPredicted RBP11.71□□□□□ -0.53
PCF11-205ENST00000530906 ZBTB22O15209 634 aa11.69□□□□□ -0.54
PCF11-205ENST00000530906 POTEHQ6S545 545 aa11.69□□□□□ -0.54
PCF11-205ENST00000530906 RBM42Q9BTD8 480 aaKnown RBP11.61□□□□□ -0.55
PCF11-205ENST00000530906 ZBTB12Q9Y330 459 aaPredicted RBP11.48□□□□□ -0.57
PCF11-205ENST00000530906 ATXN8OSP0DMR3 200 aa11.46□□□□□ -0.57
PCF11-205ENST00000530906 CHRDL2Q6WN34 429 aa11.39□□□□□ -0.59
PCF11-205ENST00000530906 OSCARQ8IYS5 282 aa11.37□□□□□ -0.59
PCF11-205ENST00000530906 AKT1S1Q96B36 256 aa11.37□□□□□ -0.59
PCF11-205ENST00000530906 REM2Q8IYK8 340 aaPredicted RBP11.28□□□□□ -0.6
PCF11-205ENST00000530906 FBLN2P98095 1184 aa11.19□□□□□ -0.62
PCF11-205ENST00000530906 MKRN4PQ13434 485 aaPredicted RBP11.18□□□□□ -0.62
PCF11-205ENST00000530906 PITPNM1O00562 1244 aa11.15□□□□□ -0.62
PCF11-205ENST00000530906 SPDYE2BA6NHP3 402 aa11.14□□□□□ -0.63
PCF11-205ENST00000530906 SPDYE6P0CI01 402 aa11.14□□□□□ -0.63
PCF11-205ENST00000530906 SPDYE2Q495Y8 402 aa11.14□□□□□ -0.63
PCF11-205ENST00000530906 CSRNP3Q8WYN3 585 aa11.14□□□□□ -0.63
PCF11-205ENST00000530906 PIP4P2Q8N4L2 257 aa11.13□□□□□ -0.63
PCF11-205ENST00000530906 FXR2P51116 673 aaKnown RBP eCLIP11.07□□□□□ -0.64
PCF11-205ENST00000530906 SSUH2Q9Y2M2 353 aa11.02□□□□□ -0.65
PCF11-205ENST00000530906 ZNF692Q9BU19 519 aaPredicted RBP11□□□□□ -0.65
PCF11-205ENST00000530906 SP7Q8TDD2 431 aaPredicted RBP10.95□□□□□ -0.66
PCF11-205ENST00000530906 SPDYE1Q8NFV5 336 aaPredicted RBP10.94□□□□□ -0.66
PCF11-205ENST00000530906 EHMT2Q96KQ7 1210 aa10.92□□□□□ -0.66
PCF11-205ENST00000530906 CLEC11AQ9Y240 323 aa10.9□□□□□ -0.66
PCF11-205ENST00000530906 HAX1O00165 279 aa10.89□□□□□ -0.67
PCF11-205ENST00000530906 PABPN1Q86U42 306 aaKnown RBP eCLIP10.85□□□□□ -0.67
PCF11-205ENST00000530906 PRKAR2AP13861 404 aaKnown RBP10.84□□□□□ -0.67
PCF11-205ENST00000530906 EVX2Q03828 476 aa10.83□□□□□ -0.68
PCF11-205ENST00000530906 PRR29P0C7W0 189 aa10.73□□□□□ -0.69
PCF11-205ENST00000530906 CHADLQ6NUI6 762 aa10.72□□□□□ -0.69
PCF11-205ENST00000530906 C19orf67A6NJJ6 358 aa10.71□□□□□ -0.69
PCF11-205ENST00000530906 SPDYE4A6NLX3 237 aa10.6□□□□□ -0.71
PCF11-205ENST00000530906 FARP1Q9Y4F1 1045 aaPredicted RBP10.58□□□□□ -0.72
PCF11-205ENST00000530906 GABBR2O75899 941 aa10.55□□□□□ -0.72
PCF11-205ENST00000530906 CCDC180Q9P1Z9 1646 aa10.55□□□□□ -0.72
PCF11-205ENST00000530906 STAG3Q9UJ98 1225 aa10.52□□□□□ -0.73
PCF11-205ENST00000530906 CREBZFQ9NS37 354 aa10.51□□□□□ -0.73
PCF11-205ENST00000530906 CD44P16070 742 aaKnown RBP10.49□□□□□ -0.73
PCF11-205ENST00000530906 PROM2Q8N271 834 aa10.4□□□□□ -0.74
PCF11-205ENST00000530906 POTEIP0CG38 1075 aa10.36□□□□□ -0.75
PCF11-205ENST00000530906 CLCN6P51797 869 aa10.36□□□□□ -0.75
PCF11-205ENST00000530906 ZNF579Q8NAF0 562 aaKnown RBP10.36□□□□□ -0.75
PCF11-205ENST00000530906 MNX1P50219 401 aaPredicted RBP10.35□□□□□ -0.75
PCF11-205ENST00000530906 ZRANB1Q9UGI0 708 aa10.35□□□□□ -0.75
PCF11-205ENST00000530906 LHX8Q68G74 356 aa10.28□□□□□ -0.76
PCF11-205ENST00000530906 NPM1P06748 294 aaKnown RBP eCLIP10.26□□□□□ -0.77
PCF11-205ENST00000530906 GALR2O43603 387 aaPredicted RBP10.24□□□□□ -0.77
PCF11-205ENST00000530906 PAK3O75914 559 aaPredicted RBP10.22□□□□□ -0.77
PCF11-205ENST00000530906 DCBLD2Q96PD2 775 aa10.22□□□□□ -0.77
PCF11-205ENST00000530906 PHF12Q96QT6 1004 aa10.22□□□□□ -0.77
PCF11-205ENST00000530906 ZCCHC6Q5VYS8 1495 aaKnown RBP10.21□□□□□ -0.78
PCF11-205ENST00000530906 DCAF1Q9Y4B6 1507 aa10.1□□□□□ -0.79
PCF11-205ENST00000530906 MIER1Q8N108 512 aa10.09□□□□□ -0.79
PCF11-205ENST00000530906 TSPYL2Q9H2G4 693 aaPredicted RBP10.09□□□□□ -0.79
PCF11-205ENST00000530906 CCDC61Q9Y6R9 512 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms