RNA–Protein interactions for RNA: ENST00000512881.5

RFC1-215, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 537 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-215ENST00000512881 CADPS2Q86UW7 1296 aa12.15□□□□□ -0.46
RFC1-215ENST00000512881 GRIN2BQ13224 1484 aa12.14□□□□□ -0.47
RFC1-215ENST00000512881 SNAPC4Q5SXM2 1469 aa12.14□□□□□ -0.47
RFC1-215ENST00000512881 ZNF687Q8N1G0 1237 aa12.14□□□□□ -0.47
RFC1-215ENST00000512881 RIMBP3CA6NJZ7 1639 aa12.14□□□□□ -0.47
RFC1-215ENST00000512881 RIMBP3BA6NNM3 1639 aa12.14□□□□□ -0.47
RFC1-215ENST00000512881 RIMBP3Q9UFD9 1639 aa12.14□□□□□ -0.47
RFC1-215ENST00000512881 PDE4AP27815 886 aa12.13□□□□□ -0.47
RFC1-215ENST00000512881 SPNS2Q8IVW8 549 aa12.13□□□□□ -0.47
RFC1-215ENST00000512881 LHX6Q9UPM6 363 aa12.13□□□□□ -0.47
RFC1-215ENST00000512881 MFSD10Q14728 455 aa12.12□□□□□ -0.47
RFC1-215ENST00000512881 GAPVD1Q14C86 1478 aa12.11□□□□□ -0.47
RFC1-215ENST00000512881 MAGI1Q96QZ7 1491 aaPredicted RBP12.11□□□□□ -0.47
RFC1-215ENST00000512881 WDR97A6NE52 1622 aa12.11□□□□□ -0.47
RFC1-215ENST00000512881 WRNQ14191 1432 aaPredicted RBP eCLIP12.11□□□□□ -0.47
RFC1-215ENST00000512881 OXER1Q8TDS5 423 aa12.1□□□□□ -0.47
RFC1-215ENST00000512881 DDX27Q96GQ7 796 aaKnown RBP12.1□□□□□ -0.47
RFC1-215ENST00000512881 LARP6Q9BRS8 491 aaKnown RBP12.1□□□□□ -0.47
RFC1-215ENST00000512881 ABCA10Q8WWZ4 1543 aa12.09□□□□□ -0.47
RFC1-215ENST00000512881 CHD1O14646 1710 aa12.08□□□□□ -0.48
RFC1-215ENST00000512881 SYNJ2O15056 1496 aa12.08□□□□□ -0.48
RFC1-215ENST00000512881 UPF1Q92900 1129 aaKnown RBP eCLIP12.07□□□□□ -0.48
RFC1-215ENST00000512881 MMRN1Q13201 1228 aa12.06□□□□□ -0.48
RFC1-215ENST00000512881 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.05□□□□□ -0.48
RFC1-215ENST00000512881 ARAP1Q96P48 1450 aa12.05□□□□□ -0.48
RFC1-215ENST00000512881 SPRYD3Q8NCJ5 442 aa12.04□□□□□ -0.48
RFC1-215ENST00000512881 TBC1D12O60347 775 aa12.03□□□□□ -0.48
RFC1-215ENST00000512881 POTEEQ6S8J3 1075 aa12.03□□□□□ -0.48
RFC1-215ENST00000512881 CLASP1Q7Z460 1538 aa12.02□□□□□ -0.48
RFC1-215ENST00000512881 SYNJ1O43426 1573 aa12.02□□□□□ -0.49
RFC1-215ENST00000512881 TOP2BQ02880 1626 aa12.01□□□□□ -0.49
RFC1-215ENST00000512881 PSDA5PKW4 1024 aaPredicted RBP12□□□□□ -0.49
RFC1-215ENST00000512881 EMILIN3Q9NT22 766 aa12□□□□□ -0.49
RFC1-215ENST00000512881 ABCA5Q8WWZ7 1642 aa12□□□□□ -0.49
RFC1-215ENST00000512881 PAXIP1Q6ZW49 1069 aaPredicted RBP11.99□□□□□ -0.49
RFC1-215ENST00000512881 PBX2P40425 430 aa11.98□□□□□ -0.49
RFC1-215ENST00000512881 FHAD1B1AJZ9 1412 aa11.97□□□□□ -0.49
RFC1-215ENST00000512881 CFAP44Q96MT7 982 aa11.97□□□□□ -0.49
RFC1-215ENST00000512881 BIVM-ERCC5R4GMW8 1640 aa11.97□□□□□ -0.49
RFC1-215ENST00000512881 GRIN2AQ12879 1464 aa11.96□□□□□ -0.49
RFC1-215ENST00000512881 LSM11P83369 360 aaKnown RBP eCLIP11.96□□□□□ -0.49
RFC1-215ENST00000512881 AXIN2Q9Y2T1 843 aa11.96□□□□□ -0.49
RFC1-215ENST00000512881 PBRM1Q86U86 1689 aa11.95□□□□□ -0.5
RFC1-215ENST00000512881 CAMK2BQ13554 666 aa11.94□□□□□ -0.5
RFC1-215ENST00000512881 NUP160Q12769 1436 aa11.94□□□□□ -0.5
RFC1-215ENST00000512881 PPP4R3BQ5MIZ7 849 aa11.93□□□□□ -0.5
RFC1-215ENST00000512881 ERICH3Q5RHP9 1530 aa11.92□□□□□ -0.5
RFC1-215ENST00000512881 EVI5O60447 810 aa11.92□□□□□ -0.5
RFC1-215ENST00000512881 ADAMTS12P58397 1594 aa11.92□□□□□ -0.5
RFC1-215ENST00000512881 ANO8Q9HCE9 1232 aaPredicted RBP11.91□□□□□ -0.5
RFC1-215ENST00000512881 ANKRD13DQ6ZTN6 518 aa11.9□□□□□ -0.5
RFC1-215ENST00000512881 JPH4Q96JJ6 628 aa11.9□□□□□ -0.5
RFC1-215ENST00000512881 ARHGAP33O14559 1287 aa11.89□□□□□ -0.51
RFC1-215ENST00000512881 ZNF454Q8N9F8 522 aa11.89□□□□□ -0.51
RFC1-215ENST00000512881 IGF1RP08069 1367 aa11.89□□□□□ -0.51
RFC1-215ENST00000512881 CEP170Q5SW79 1584 aa11.88□□□□□ -0.51
RFC1-215ENST00000512881 FOSBP53539 338 aa11.88□□□□□ -0.51
RFC1-215ENST00000512881 MAP3K9P80192 1104 aa11.88□□□□□ -0.51
RFC1-215ENST00000512881 PSEN2P49810 448 aa11.87□□□□□ -0.51
RFC1-215ENST00000512881 PTGER2P43116 358 aa11.86□□□□□ -0.51
RFC1-215ENST00000512881 DMRTA1Q5VZB9 504 aa11.86□□□□□ -0.51
RFC1-215ENST00000512881 ERCC6L2Q5T890 1561 aa11.86□□□□□ -0.51
RFC1-215ENST00000512881 KIF27Q86VH2 1401 aa11.86□□□□□ -0.51
RFC1-215ENST00000512881 MYT1LQ9UL68 1186 aa11.85□□□□□ -0.51
RFC1-215ENST00000512881 PRG4Q92954 1404 aaPredicted RBP11.85□□□□□ -0.51
RFC1-215ENST00000512881 DPYSL4O14531 572 aa11.84□□□□□ -0.51
RFC1-215ENST00000512881 RNF166Q96A37 237 aaPredicted RBP11.84□□□□□ -0.51
RFC1-215ENST00000512881 KCNK17Q96T54 332 aa11.83□□□□□ -0.52
RFC1-215ENST00000512881 BCL2L12Q9HB09 334 aa11.83□□□□□ -0.52
RFC1-215ENST00000512881 ADGRD1Q6QNK2 874 aa11.82□□□□□ -0.52
RFC1-215ENST00000512881 CARMIL1Q5VZK9 1371 aa11.79□□□□□ -0.52
RFC1-215ENST00000512881 SHROOM2Q13796 1616 aa11.79□□□□□ -0.52
RFC1-215ENST00000512881 TK2O00142 265 aa11.79□□□□□ -0.52
RFC1-215ENST00000512881 ADAM33Q9BZ11 813 aa11.79□□□□□ -0.52
RFC1-215ENST00000512881 ZDHHC16Q969W1 377 aa11.78□□□□□ -0.52
RFC1-215ENST00000512881 PCDHGA10Q9Y5H3 936 aa11.78□□□□□ -0.52
RFC1-215ENST00000512881 KIAA0586Q9BVV6 1533 aa11.77□□□□□ -0.52
RFC1-215ENST00000512881 HRO43593 1189 aa11.76□□□□□ -0.53
RFC1-215ENST00000512881 KCNH8Q96L42 1107 aa11.76□□□□□ -0.53
RFC1-215ENST00000512881 PDIA6Q15084 440 aa11.75□□□□□ -0.53
RFC1-215ENST00000512881 E2F4Q16254 413 aa11.75□□□□□ -0.53
RFC1-215ENST00000512881 TSHZ2Q9NRE2 1034 aa11.75□□□□□ -0.53
RFC1-215ENST00000512881 PHF14O94880 888 aa11.74□□□□□ -0.53
RFC1-215ENST00000512881 PTPREP23469 700 aa11.74□□□□□ -0.53
RFC1-215ENST00000512881 RUSC2Q8N2Y8 1516 aa11.73□□□□□ -0.53
RFC1-215ENST00000512881 ARIH1Q9Y4X5 557 aaPredicted RBP11.73□□□□□ -0.53
RFC1-215ENST00000512881 WDR70Q9NW82 654 aa11.72□□□□□ -0.53
RFC1-215ENST00000512881 VPS9D1Q9Y2B5 631 aa11.72□□□□□ -0.53
RFC1-215ENST00000512881 TYW1BQ6NUM6 668 aa11.71□□□□□ -0.53
RFC1-215ENST00000512881 SLC4A5Q9BY07 1137 aa11.71□□□□□ -0.53
RFC1-215ENST00000512881 CUL7Q14999 1698 aa11.71□□□□□ -0.54
RFC1-215ENST00000512881 TTBK1Q5TCY1 1321 aaPredicted RBP11.7□□□□□ -0.54
RFC1-215ENST00000512881 FBXW7Q969H0 707 aa11.7□□□□□ -0.54
RFC1-215ENST00000512881 ZBED2Q9BTP6 218 aa11.7□□□□□ -0.54
RFC1-215ENST00000512881 PTPRGP23470 1445 aa11.69□□□□□ -0.54
RFC1-215ENST00000512881 FAM69CQ0P6D2 419 aa11.69□□□□□ -0.54
RFC1-215ENST00000512881 DDX12PQ92771 950 aa11.68□□□□□ -0.54
RFC1-215ENST00000512881 PPP1R3GB7ZBB8 358 aa11.67□□□□□ -0.54
RFC1-215ENST00000512881 EPAS1Q99814 870 aa11.67□□□□□ -0.54
RFC1-215ENST00000512881 CARMIL2Q6F5E8 1435 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms