RNA–Protein interactions for RNA: ENST00000512881.5

RFC1-215, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 537 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-215ENST00000512881 AEBP2Q6ZN18 517 aaPredicted RBP27.85■■■□□ 2.05
RFC1-215ENST00000512881 CHIC1Q5VXU3 224 aa26.73■■□□□ 1.87
RFC1-215ENST00000512881 SENP3Q9H4L4 574 aaPredicted RBP23.65■■□□□ 1.38
RFC1-215ENST00000512881 PHF23Q9BUL5 403 aaPredicted RBP23.49■■□□□ 1.35
RFC1-215ENST00000512881 FOXD1Q16676 465 aa22.02■■□□□ 1.12
RFC1-215ENST00000512881 PLPPR3Q6T4P5 718 aa21.48■■□□□ 1.03
RFC1-215ENST00000512881 PPP6R1Q9UPN7 881 aa20.85■□□□□ 0.93
RFC1-215ENST00000512881 ADRA2BP18089 450 aa20.78■□□□□ 0.92
RFC1-215ENST00000512881 PIAS4Q8N2W9 510 aaPredicted RBP20.64■□□□□ 0.89
RFC1-215ENST00000512881 MSH5O43196 834 aa20.45■□□□□ 0.86
RFC1-215ENST00000512881 POTEDQ86YR6 584 aa19.43■□□□□ 0.7
RFC1-215ENST00000512881 MAPK8IP2Q13387 824 aaPredicted RBP18.98■□□□□ 0.63
RFC1-215ENST00000512881 SCAF1Q9H7N4 1312 aaKnown RBP18.94■□□□□ 0.62
RFC1-215ENST00000512881 PPP4R3CPQ6ZMV5 832 aa18.87■□□□□ 0.61
RFC1-215ENST00000512881 DMRT2Q9Y5R5 561 aa18.83■□□□□ 0.6
RFC1-215ENST00000512881 CNKSR2Q8WXI2 1034 aa18.44■□□□□ 0.54
RFC1-215ENST00000512881 HOXD11P31277 338 aaPredicted RBP18.27■□□□□ 0.52
RFC1-215ENST00000512881 RNF216Q9NWF9 866 aaPredicted RBP18.2■□□□□ 0.5
RFC1-215ENST00000512881 NCBP3Q53F19 620 aaKnown RBP18.19■□□□□ 0.5
RFC1-215ENST00000512881 NPM3O75607 178 aaKnown RBP18.01■□□□□ 0.47
RFC1-215ENST00000512881 KCNA4P22459 653 aa17.97■□□□□ 0.47
RFC1-215ENST00000512881 DCAF8L1A6NGE4 600 aa17.96■□□□□ 0.47
RFC1-215ENST00000512881 DNAJC5BQ9UF47 199 aa17.58■□□□□ 0.4
RFC1-215ENST00000512881 RNF39Q9H2S5 420 aa17.52■□□□□ 0.4
RFC1-215ENST00000512881 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.34■□□□□ 0.371e-6■■■■■ 31.4
RFC1-215ENST00000512881 CACNB1Q02641 598 aaPredicted RBP17.31■□□□□ 0.36
RFC1-215ENST00000512881 C1QBPQ07021 282 aaKnown RBP17.24■□□□□ 0.35
RFC1-215ENST00000512881 SLC4A2P04920 1241 aa17.13■□□□□ 0.33
RFC1-215ENST00000512881 U3KPZ7 1027 aaPredicted RBP17.09■□□□□ 0.33
RFC1-215ENST00000512881 SLC4A1APQ9BWU0 796 aaKnown RBP16.99■□□□□ 0.31
RFC1-215ENST00000512881 NISCHQ9Y2I1 1504 aa16.9■□□□□ 0.3
RFC1-215ENST00000512881 SPINK5Q9NQ38 1064 aaPredicted RBP16.73■□□□□ 0.27
RFC1-215ENST00000512881 FOXD4L1Q9NU39 408 aa16.65■□□□□ 0.26
RFC1-215ENST00000512881 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.64■□□□□ 0.25
RFC1-215ENST00000512881 MYCNP04198 464 aaPredicted RBP16.64■□□□□ 0.25
RFC1-215ENST00000512881 HNRNPUL2Q1KMD3 747 aaKnown RBP16.64■□□□□ 0.25
RFC1-215ENST00000512881 CAPN15O75808 1086 aa16.62■□□□□ 0.25
RFC1-215ENST00000512881 ZBTB22O15209 634 aa16.58■□□□□ 0.24
RFC1-215ENST00000512881 SAMD1Q6SPF0 538 aaPredicted RBP16.58■□□□□ 0.24
RFC1-215ENST00000512881 APLP2Q06481 763 aa16.55■□□□□ 0.24
RFC1-215ENST00000512881 DSG3P32926 999 aa16.51■□□□□ 0.23
RFC1-215ENST00000512881 ZNF219Q9P2Y4 722 aaPredicted RBP16.45■□□□□ 0.22
RFC1-215ENST00000512881 TRHP20396 242 aaPredicted RBP16.44■□□□□ 0.22
RFC1-215ENST00000512881 ABCB7O75027 752 aa16.31■□□□□ 0.2
RFC1-215ENST00000512881 ATF5Q9Y2D1 282 aaPredicted RBP16.26■□□□□ 0.19
RFC1-215ENST00000512881 ATXN8OSP0DMR3 200 aa16.09■□□□□ 0.17
RFC1-215ENST00000512881 POLA2Q14181 598 aa16.08■□□□□ 0.16
RFC1-215ENST00000512881 CSRNP3Q8WYN3 585 aa16.06■□□□□ 0.16
RFC1-215ENST00000512881 EHMT2Q96KQ7 1210 aa16.01■□□□□ 0.15
RFC1-215ENST00000512881 ZBTB12Q9Y330 459 aaPredicted RBP15.78■□□□□ 0.12
RFC1-215ENST00000512881 RBM42Q9BTD8 480 aaKnown RBP15.7■□□□□ 0.1
RFC1-215ENST00000512881 OSCARQ8IYS5 282 aa15.62■□□□□ 0.09
RFC1-215ENST00000512881 MKRN4PQ13434 485 aaPredicted RBP15.54■□□□□ 0.08
RFC1-215ENST00000512881 FBLN2P98095 1184 aa15.52■□□□□ 0.08
RFC1-215ENST00000512881 AKT1S1Q96B36 256 aa15.42■□□□□ 0.06
RFC1-215ENST00000512881 SPDYE2BA6NHP3 402 aa15.34■□□□□ 0.05
RFC1-215ENST00000512881 SPDYE6P0CI01 402 aa15.34■□□□□ 0.05
RFC1-215ENST00000512881 SPDYE2Q495Y8 402 aa15.34■□□□□ 0.05
RFC1-215ENST00000512881 REM2Q8IYK8 340 aaPredicted RBP15.28■□□□□ 0.04
RFC1-215ENST00000512881 POTEHQ6S545 545 aa15.27■□□□□ 0.04
RFC1-215ENST00000512881 CHRDL2Q6WN34 429 aa15.25■□□□□ 0.03
RFC1-215ENST00000512881 SSUH2Q9Y2M2 353 aa15.22■□□□□ 0.03
RFC1-215ENST00000512881 ZNF692Q9BU19 519 aaPredicted RBP15.17■□□□□ 0.02
RFC1-215ENST00000512881 PITPNM1O00562 1244 aa15.14■□□□□ 0.01
RFC1-215ENST00000512881 ABCC9O60706 1549 aa15.07■□□□□ 0
RFC1-215ENST00000512881 CCDC180Q9P1Z9 1646 aa15□□□□□ -0.01
RFC1-215ENST00000512881 PABPN1Q86U42 306 aaKnown RBP eCLIP15□□□□□ -0.01
RFC1-215ENST00000512881 PIP4P2Q8N4L2 257 aa14.97□□□□□ -0.01
RFC1-215ENST00000512881 SPDYE1Q8NFV5 336 aaPredicted RBP14.97□□□□□ -0.01
RFC1-215ENST00000512881 FXR2P51116 673 aaKnown RBP eCLIP14.94□□□□□ -0.026e-6■■■■□ 25.8
RFC1-215ENST00000512881 SPDYE4A6NLX3 237 aa14.91□□□□□ -0.02
RFC1-215ENST00000512881 CLEC11AQ9Y240 323 aa14.91□□□□□ -0.02
RFC1-215ENST00000512881 PRKAR2AP13861 404 aaKnown RBP14.72□□□□□ -0.05
RFC1-215ENST00000512881 PRR29P0C7W0 189 aa14.71□□□□□ -0.05
RFC1-215ENST00000512881 PROM2Q8N271 834 aa14.68□□□□□ -0.06
RFC1-215ENST00000512881 CHADLQ6NUI6 762 aa14.64□□□□□ -0.07
RFC1-215ENST00000512881 STAG3Q9UJ98 1225 aa14.61□□□□□ -0.07
RFC1-215ENST00000512881 HAX1O00165 279 aa14.54□□□□□ -0.08
RFC1-215ENST00000512881 FKBP8Q14318 412 aa14.52□□□□□ -0.09
RFC1-215ENST00000512881 CREBZFQ9NS37 354 aa14.49□□□□□ -0.09
RFC1-215ENST00000512881 SP7Q8TDD2 431 aaPredicted RBP14.48□□□□□ -0.09
RFC1-215ENST00000512881 EVX2Q03828 476 aa14.46□□□□□ -0.09
RFC1-215ENST00000512881 C19orf67A6NJJ6 358 aa14.45□□□□□ -0.1
RFC1-215ENST00000512881 FARP1Q9Y4F1 1045 aaPredicted RBP14.44□□□□□ -0.1
RFC1-215ENST00000512881 DCAF8L2P0C7V8 631 aa14.37□□□□□ -0.11
RFC1-215ENST00000512881 RB1CC1Q8TDY2 1594 aa14.32□□□□□ -0.12
RFC1-215ENST00000512881 MNX1P50219 401 aaPredicted RBP14.31□□□□□ -0.12
RFC1-215ENST00000512881 CD44P16070 742 aaKnown RBP14.28□□□□□ -0.12
RFC1-215ENST00000512881 NACADO15069 1562 aa14.26□□□□□ -0.13
RFC1-215ENST00000512881 NPM1P06748 294 aaKnown RBP eCLIP14.16□□□□□ -0.14
RFC1-215ENST00000512881 GABBR2O75899 941 aa14.13□□□□□ -0.15
RFC1-215ENST00000512881 MIER1Q8N108 512 aa14.13□□□□□ -0.15
RFC1-215ENST00000512881 ZRANB1Q9UGI0 708 aa14.11□□□□□ -0.15
RFC1-215ENST00000512881 ZNF579Q8NAF0 562 aaKnown RBP14.1□□□□□ -0.15
RFC1-215ENST00000512881 MYO15BQ96JP2 1530 aa14.09□□□□□ -0.15
RFC1-215ENST00000512881 PLEKHG5O94827 1062 aa14.08□□□□□ -0.16
RFC1-215ENST00000512881 PLCD3Q8N3E9 789 aa14.08□□□□□ -0.16
RFC1-215ENST00000512881 FBXO3Q9UK99 471 aa14.07□□□□□ -0.16
RFC1-215ENST00000512881 PAK3O75914 559 aaPredicted RBP14.03□□□□□ -0.16
RFC1-215ENST00000512881 ZCCHC6Q5VYS8 1495 aaKnown RBP13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms