RNA–Protein interactions for RNA: ENST00000508216.5

PDLIM5-210, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2 BASIC

Gene PDLIM5, Length 1,794 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-210ENST00000508216 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.86□□□□□ -0.19
PDLIM5-210ENST00000508216 KIAA1211Q6ZU35 1233 aa13.86□□□□□ -0.19
PDLIM5-210ENST00000508216 POLR3GLQ9BT43 218 aa13.86□□□□□ -0.19
PDLIM5-210ENST00000508216 RALBP1Q15311 655 aa13.85□□□□□ -0.19
PDLIM5-210ENST00000508216 CEP162Q5TB80 1403 aa13.84□□□□□ -0.19
PDLIM5-210ENST00000508216 PDE4AP27815 886 aa13.84□□□□□ -0.19
PDLIM5-210ENST00000508216 DYNC1I1O14576 645 aa13.83□□□□□ -0.19
PDLIM5-210ENST00000508216 XRCC6P12956 609 aaKnown RBP eCLIP13.83□□□□□ -0.2
PDLIM5-210ENST00000508216 NBPF20Q3BBV1 942 aa13.83□□□□□ -0.2
PDLIM5-210ENST00000508216 PUS7Q96PZ0 661 aaKnown RBP13.83□□□□□ -0.2
PDLIM5-210ENST00000508216 CARD10Q9BWT7 1032 aa13.82□□□□□ -0.2
PDLIM5-210ENST00000508216 RB1CC1Q8TDY2 1594 aa13.82□□□□□ -0.2
PDLIM5-210ENST00000508216 PIP4P2Q8N4L2 257 aa13.81□□□□□ -0.2
PDLIM5-210ENST00000508216 TSPYL1Q9H0U9 437 aa13.81□□□□□ -0.2
PDLIM5-210ENST00000508216 PRDM10Q9NQV6 1147 aa13.81□□□□□ -0.2
PDLIM5-210ENST00000508216 SOX12O15370 315 aa13.81□□□□□ -0.2
PDLIM5-210ENST00000508216 FRAT2O75474 233 aaPredicted RBP13.81□□□□□ -0.2
PDLIM5-210ENST00000508216 MRE11P49959 708 aa13.8□□□□□ -0.2
PDLIM5-210ENST00000508216 TMEM132AQ24JP5 1023 aa13.8□□□□□ -0.2
PDLIM5-210ENST00000508216 SMG6Q86US8 1419 aaKnown RBP13.79□□□□□ -0.2
PDLIM5-210ENST00000508216 APPP05067 770 aa13.79□□□□□ -0.2
PDLIM5-210ENST00000508216 PRKAR2AP13861 404 aaKnown RBP13.79□□□□□ -0.2
PDLIM5-210ENST00000508216 HNRNPUQ00839 825 aaKnown RBP eCLIP13.78□□□□□ -0.2
PDLIM5-210ENST00000508216 CC2D1BQ5T0F9 858 aaKnown RBP13.78□□□□□ -0.2
PDLIM5-210ENST00000508216 CHADLQ6NUI6 762 aa13.78□□□□□ -0.2
PDLIM5-210ENST00000508216 MNX1P50219 401 aaPredicted RBP13.78□□□□□ -0.2
PDLIM5-210ENST00000508216 NPM1P06748 294 aaKnown RBP eCLIP13.77□□□□□ -0.21
PDLIM5-210ENST00000508216 TNIKQ9UKE5 1360 aa13.77□□□□□ -0.21
PDLIM5-210ENST00000508216 PATL2C9JE40 543 aaKnown RBP13.75□□□□□ -0.21
PDLIM5-210ENST00000508216 SPOCK2Q92563 424 aa13.75□□□□□ -0.21
PDLIM5-210ENST00000508216 IRX5P78411 483 aaPredicted RBP13.74□□□□□ -0.21
PDLIM5-210ENST00000508216 ERBB4Q15303 1308 aa13.74□□□□□ -0.21
PDLIM5-210ENST00000508216 CFAP65Q6ZU64 1925 aaKnown RBP13.74□□□□□ -0.21
PDLIM5-210ENST00000508216 TMED8Q6PL24 325 aaPredicted RBP13.73□□□□□ -0.21
PDLIM5-210ENST00000508216 EGFL6Q8IUX8 553 aa13.73□□□□□ -0.21
PDLIM5-210ENST00000508216 DDX10Q13206 875 aaKnown RBP13.73□□□□□ -0.21
PDLIM5-210ENST00000508216 ZNF592Q92610 1267 aa13.73□□□□□ -0.21
PDLIM5-210ENST00000508216 EFCC1Q9HA90 598 aa13.73□□□□□ -0.21
PDLIM5-210ENST00000508216 POGKQ9P215 609 aa13.73□□□□□ -0.21
PDLIM5-210ENST00000508216 FAM43BQ6ZT52 329 aaPredicted RBP13.72□□□□□ -0.21
PDLIM5-210ENST00000508216 MYH16Q9H6N6 1097 aa13.72□□□□□ -0.21
PDLIM5-210ENST00000508216 FAM13BQ9NYF5 915 aa13.7□□□□□ -0.22
PDLIM5-210ENST00000508216 FARP1Q9Y4F1 1045 aaPredicted RBP13.7□□□□□ -0.22
PDLIM5-210ENST00000508216 NINLQ9Y2I6 1382 aa13.69□□□□□ -0.22
PDLIM5-210ENST00000508216 BAZ1BQ9UIG0 1483 aaKnown RBP13.68□□□□□ -0.22
PDLIM5-210ENST00000508216 TULP2O00295 520 aa13.68□□□□□ -0.22
PDLIM5-210ENST00000508216 IGSF3O75054 1194 aa13.68□□□□□ -0.22
PDLIM5-210ENST00000508216 HS1BP3Q53T59 392 aa13.68□□□□□ -0.22
PDLIM5-210ENST00000508216 HSP90AB3PQ58FF7 597 aa13.68□□□□□ -0.22
PDLIM5-210ENST00000508216 PSMD1Q99460 953 aa13.68□□□□□ -0.22
PDLIM5-210ENST00000508216 ZSCAN30Q86W11 494 aa13.66□□□□□ -0.22
PDLIM5-210ENST00000508216 NBPF11Q86T75 865 aa13.66□□□□□ -0.22
PDLIM5-210ENST00000508216 NBPF1Q3BBV0 1214 aa13.65□□□□□ -0.22
PDLIM5-210ENST00000508216 CCDC66A2RUB6 948 aa13.64□□□□□ -0.23
PDLIM5-210ENST00000508216 VIRMAQ69YN4 1812 aaKnown RBP13.63□□□□□ -0.23
PDLIM5-210ENST00000508216 ZNF500O60304 480 aaPredicted RBP13.63□□□□□ -0.23
PDLIM5-210ENST00000508216 NUBP1P53384 320 aa13.63□□□□□ -0.23
PDLIM5-210ENST00000508216 CC2D2BQ6DHV5 1058 aa13.63□□□□□ -0.23
PDLIM5-210ENST00000508216 NGEFQ8N5V2 710 aa13.63□□□□□ -0.23
PDLIM5-210ENST00000508216 SCAPERQ9BY12 1400 aa13.63□□□□□ -0.23
PDLIM5-210ENST00000508216 TTC36A6NLP5 189 aa13.62□□□□□ -0.23
PDLIM5-210ENST00000508216 CSPP1Q1MSJ5 1256 aa13.62□□□□□ -0.23
PDLIM5-210ENST00000508216 PPP1R9BQ96SB3 815 aa13.62□□□□□ -0.23
PDLIM5-210ENST00000508216 RAI14Q9P0K7 980 aa13.62□□□□□ -0.23
PDLIM5-210ENST00000508216 CGNQ9P2M7 1197 aaKnown RBP13.62□□□□□ -0.23
PDLIM5-210ENST00000508216 UQCRHLA0A096LP55 91 aa13.61□□□□□ -0.23
PDLIM5-210ENST00000508216 UQCRHP07919 91 aa13.61□□□□□ -0.23
PDLIM5-210ENST00000508216 PANK2Q9BZ23 570 aa13.61□□□□□ -0.23
PDLIM5-210ENST00000508216 WDR97A6NE52 1622 aa13.61□□□□□ -0.23
PDLIM5-210ENST00000508216 MAFGO15525 162 aa13.6□□□□□ -0.23
PDLIM5-210ENST00000508216 SATB1Q01826 763 aa13.6□□□□□ -0.23
PDLIM5-210ENST00000508216 GABPB1Q06547 395 aaPredicted RBP13.6□□□□□ -0.23
PDLIM5-210ENST00000508216 GRPEL1Q9HAV7 217 aa13.6□□□□□ -0.23
PDLIM5-210ENST00000508216 CEP164Q9UPV0 1460 aa13.59□□□□□ -0.23
PDLIM5-210ENST00000508216 MAPKBP1O60336 1514 aa13.59□□□□□ -0.23
PDLIM5-210ENST00000508216 E9PSI1 815 aa13.59□□□□□ -0.23
PDLIM5-210ENST00000508216 CCDC173Q0VFZ6 552 aa13.59□□□□□ -0.23
PDLIM5-210ENST00000508216 KIF3AQ9Y496 699 aa13.59□□□□□ -0.23
PDLIM5-210ENST00000508216 CTR9Q6PD62 1173 aa13.58□□□□□ -0.23
PDLIM5-210ENST00000508216 RAD50Q92878 1312 aa13.58□□□□□ -0.24
PDLIM5-210ENST00000508216 MCM5P33992 734 aa13.58□□□□□ -0.24
PDLIM5-210ENST00000508216 NBPF9Q3BBW0 867 aa13.58□□□□□ -0.24
PDLIM5-210ENST00000508216 SASS6Q6UVJ0 657 aa13.58□□□□□ -0.24
PDLIM5-210ENST00000508216 CREBRFQ8IUR6 639 aa13.58□□□□□ -0.24
PDLIM5-210ENST00000508216 TIGD1Q96MW7 591 aa13.58□□□□□ -0.24
PDLIM5-210ENST00000508216 BSDC1Q9NW68 430 aaPredicted RBP13.58□□□□□ -0.24
PDLIM5-210ENST00000508216 MFAP1P55081 439 aaKnown RBP13.57□□□□□ -0.24
PDLIM5-210ENST00000508216 TMC1Q8TDI8 760 aa13.57□□□□□ -0.24
PDLIM5-210ENST00000508216 LMOD3Q0VAK6 560 aa13.56□□□□□ -0.24
PDLIM5-210ENST00000508216 NUDCQ9Y266 331 aa13.56□□□□□ -0.24
PDLIM5-210ENST00000508216 CECR2Q9BXF3 1484 aa13.56□□□□□ -0.24
PDLIM5-210ENST00000508216 MYCBPQ99417 103 aaPredicted RBP13.55□□□□□ -0.24
PDLIM5-210ENST00000508216 IBTKQ9P2D0 1353 aaPredicted RBP13.55□□□□□ -0.24
PDLIM5-210ENST00000508216 SH3BP1Q9Y3L3 701 aa13.55□□□□□ -0.24
PDLIM5-210ENST00000508216 PRDM2Q13029 1718 aa13.55□□□□□ -0.24
PDLIM5-210ENST00000508216 CCDC144AA2RUR9 1427 aa13.55□□□□□ -0.24
PDLIM5-210ENST00000508216 GTF2F1P35269 517 aaKnown RBP eCLIP13.55□□□□□ -0.24
PDLIM5-210ENST00000508216 BECN1Q14457 450 aa13.55□□□□□ -0.24
PDLIM5-210ENST00000508216 CEP83Q9Y592 693 aa13.55□□□□□ -0.24
PDLIM5-210ENST00000508216 BRPF1P55201 1214 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms