RNA–Protein interactions for RNA: ENST00000508216.5

PDLIM5-210, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2 BASIC

Gene PDLIM5, Length 1,794 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-210ENST00000508216 AEBP2Q6ZN18 517 aaPredicted RBP25.9■■□□□ 1.74
PDLIM5-210ENST00000508216 CHIC1Q5VXU3 224 aa25.41■■□□□ 1.66
PDLIM5-210ENST00000508216 PHF23Q9BUL5 403 aaPredicted RBP22.34■■□□□ 1.17
PDLIM5-210ENST00000508216 SENP3Q9H4L4 574 aaPredicted RBP22■■□□□ 1.11
PDLIM5-210ENST00000508216 PLPPR3Q6T4P5 718 aa20.68■□□□□ 0.9
PDLIM5-210ENST00000508216 FOXD1Q16676 465 aa20.39■□□□□ 0.86
PDLIM5-210ENST00000508216 PELP1Q8IZL8 1130 aaKnown RBP19.95■□□□□ 0.78
PDLIM5-210ENST00000508216 MYT1Q01538 1121 aa19.78■□□□□ 0.76
PDLIM5-210ENST00000508216 PPP6R1Q9UPN7 881 aa19.67■□□□□ 0.74
PDLIM5-210ENST00000508216 ADRA2BP18089 450 aa19.65■□□□□ 0.74
PDLIM5-210ENST00000508216 PIAS4Q8N2W9 510 aaPredicted RBP19.24■□□□□ 0.67
PDLIM5-210ENST00000508216 TTBK1Q5TCY1 1321 aaPredicted RBP19.18■□□□□ 0.66
PDLIM5-210ENST00000508216 MSH5O43196 834 aa18.8■□□□□ 0.6
PDLIM5-210ENST00000508216 PPP4R3CPQ6ZMV5 832 aa18.22■□□□□ 0.51
PDLIM5-210ENST00000508216 HRCP23327 699 aa18.14■□□□□ 0.5
PDLIM5-210ENST00000508216 PRKCSHP14314 528 aaPredicted RBP18.06■□□□□ 0.48
PDLIM5-210ENST00000508216 ERICH6Q7L0X2 663 aa18.04■□□□□ 0.48
PDLIM5-210ENST00000508216 SCAF1Q9H7N4 1312 aaKnown RBP18.03■□□□□ 0.48
PDLIM5-210ENST00000508216 APLP2Q06481 763 aa18.02■□□□□ 0.47
PDLIM5-210ENST00000508216 KCNA4P22459 653 aa17.87■□□□□ 0.45
PDLIM5-210ENST00000508216 SLC24A1O60721 1099 aa17.83■□□□□ 0.44
PDLIM5-210ENST00000508216 MAPK8IP2Q13387 824 aaPredicted RBP17.8■□□□□ 0.44
PDLIM5-210ENST00000508216 NCBP3Q53F19 620 aaKnown RBP17.79■□□□□ 0.44
PDLIM5-210ENST00000508216 CNKSR2Q8WXI2 1034 aa17.71■□□□□ 0.43
PDLIM5-210ENST00000508216 BCL11AQ9H165 835 aa17.61■□□□□ 0.41
PDLIM5-210ENST00000508216 DMRT2Q9Y5R5 561 aa17.58■□□□□ 0.4
PDLIM5-210ENST00000508216 NPM3O75607 178 aaKnown RBP17.51■□□□□ 0.39
PDLIM5-210ENST00000508216 RNF216Q9NWF9 866 aaPredicted RBP17.35■□□□□ 0.37
PDLIM5-210ENST00000508216 FAM9AQ8IZU1 332 aaPredicted RBP17.31■□□□□ 0.36
PDLIM5-210ENST00000508216 DAXXQ9UER7 740 aaPredicted RBP17.28■□□□□ 0.36
PDLIM5-210ENST00000508216 CENPBP07199 599 aaPredicted RBP17.26■□□□□ 0.35
PDLIM5-210ENST00000508216 HOXD11P31277 338 aaPredicted RBP17.25■□□□□ 0.35
PDLIM5-210ENST00000508216 PPARGC1BQ86YN6 1023 aaKnown RBP17.09■□□□□ 0.33
PDLIM5-210ENST00000508216 DNAJC5BQ9UF47 199 aa17.06■□□□□ 0.32
PDLIM5-210ENST00000508216 SLC4A1APQ9BWU0 796 aaKnown RBP17.05■□□□□ 0.32
PDLIM5-210ENST00000508216 ACIN1Q9UKV3 1341 aaKnown RBP17.01■□□□□ 0.31
PDLIM5-210ENST00000508216 POTEDQ86YR6 584 aa16.94■□□□□ 0.3
PDLIM5-210ENST00000508216 ZEB1P37275 1124 aaPredicted RBP16.89■□□□□ 0.3
PDLIM5-210ENST00000508216 ANP32EQ9BTT0 268 aa16.85■□□□□ 0.29
PDLIM5-210ENST00000508216 DCAF8L1A6NGE4 600 aa16.76■□□□□ 0.27
PDLIM5-210ENST00000508216 EIF5BO60841 1220 aaKnown RBP16.72■□□□□ 0.27
PDLIM5-210ENST00000508216 GTF3C3Q9Y5Q9 886 aa16.69■□□□□ 0.26
PDLIM5-210ENST00000508216 NEUROD1Q13562 356 aa16.66■□□□□ 0.26
PDLIM5-210ENST00000508216 PCGF6Q9BYE7 350 aa16.66■□□□□ 0.26
PDLIM5-210ENST00000508216 CCDC180Q9P1Z9 1646 aa16.65■□□□□ 0.26
PDLIM5-210ENST00000508216 EHMT2Q96KQ7 1210 aa16.61■□□□□ 0.25
PDLIM5-210ENST00000508216 UBE2Q2Q8WVN8 375 aa16.6■□□□□ 0.25
PDLIM5-210ENST00000508216 DCAF1Q9Y4B6 1507 aa16.59■□□□□ 0.25
PDLIM5-210ENST00000508216 SLC4A2P04920 1241 aa16.51■□□□□ 0.23
PDLIM5-210ENST00000508216 MYO15BQ96JP2 1530 aa16.49■□□□□ 0.23
PDLIM5-210ENST00000508216 CSRNP3Q8WYN3 585 aa16.46■□□□□ 0.23
PDLIM5-210ENST00000508216 FOXD4L1Q9NU39 408 aa16.45■□□□□ 0.22
PDLIM5-210ENST00000508216 ZBTB22O15209 634 aa16.44■□□□□ 0.22
PDLIM5-210ENST00000508216 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.41■□□□□ 0.222e-6■■□□□ 12.3
PDLIM5-210ENST00000508216 CLSPNQ9HAW4 1339 aa16.35■□□□□ 0.21
PDLIM5-210ENST00000508216 ERICH6BQ5W0A0 696 aa16.25■□□□□ 0.19
PDLIM5-210ENST00000508216 MYT1LQ9UL68 1186 aa16.24■□□□□ 0.19
PDLIM5-210ENST00000508216 TRIM26Q12899 539 aaPredicted RBP16.22■□□□□ 0.19
PDLIM5-210ENST00000508216 MYCNP04198 464 aaPredicted RBP16.19■□□□□ 0.18
PDLIM5-210ENST00000508216 U3KPZ7 1027 aaPredicted RBP16.16■□□□□ 0.18
PDLIM5-210ENST00000508216 ANO8Q9HCE9 1232 aaPredicted RBP16.15■□□□□ 0.18
PDLIM5-210ENST00000508216 NISCHQ9Y2I1 1504 aa16.12■□□□□ 0.17
PDLIM5-210ENST00000508216 RNF39Q9H2S5 420 aa16.1■□□□□ 0.17
PDLIM5-210ENST00000508216 PKNOX2Q96KN3 472 aa16.05■□□□□ 0.16
PDLIM5-210ENST00000508216 PODXL2Q9NZ53 605 aa16.04■□□□□ 0.16
PDLIM5-210ENST00000508216 TSHZ2Q9NRE2 1034 aa16.03■□□□□ 0.16
PDLIM5-210ENST00000508216 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.03■□□□□ 0.16
PDLIM5-210ENST00000508216 HNRNPUL2Q1KMD3 747 aaKnown RBP16.03■□□□□ 0.16
PDLIM5-210ENST00000508216 PLEKHG5O94827 1062 aa16.02■□□□□ 0.15
PDLIM5-210ENST00000508216 SAMD1Q6SPF0 538 aaPredicted RBP15.96■□□□□ 0.15
PDLIM5-210ENST00000508216 C1QBPQ07021 282 aaKnown RBP15.94■□□□□ 0.14
PDLIM5-210ENST00000508216 ATXN8OSP0DMR3 200 aa15.9■□□□□ 0.14
PDLIM5-210ENST00000508216 DIEXFQ68CQ4 756 aaKnown RBP15.86■□□□□ 0.13
PDLIM5-210ENST00000508216 SALL2Q9Y467 1007 aaPredicted RBP15.82■□□□□ 0.12
PDLIM5-210ENST00000508216 ARXQ96QS3 562 aa15.8■□□□□ 0.12
PDLIM5-210ENST00000508216 NEFLP07196 543 aa15.76■□□□□ 0.11
PDLIM5-210ENST00000508216 SUPT16HQ9Y5B9 1047 aaKnown RBP15.74■□□□□ 0.11
PDLIM5-210ENST00000508216 ATF5Q9Y2D1 282 aaPredicted RBP15.72■□□□□ 0.11
PDLIM5-210ENST00000508216 TRIM41Q8WV44 630 aa15.68■□□□□ 0.1
PDLIM5-210ENST00000508216 RANGAP1P46060 587 aaPredicted RBP15.67■□□□□ 0.1
PDLIM5-210ENST00000508216 SPINK5Q9NQ38 1064 aaPredicted RBP15.67■□□□□ 0.1
PDLIM5-210ENST00000508216 DEKP35659 375 aaKnown RBP15.61■□□□□ 0.09
PDLIM5-210ENST00000508216 CAPN15O75808 1086 aa15.6■□□□□ 0.09
PDLIM5-210ENST00000508216 CACNB1Q02641 598 aaPredicted RBP15.6■□□□□ 0.09
PDLIM5-210ENST00000508216 FANCIQ9NVI1 1328 aa15.59■□□□□ 0.09
PDLIM5-210ENST00000508216 ZNF219Q9P2Y4 722 aaPredicted RBP15.58■□□□□ 0.08
PDLIM5-210ENST00000508216 TRHP20396 242 aaPredicted RBP15.54■□□□□ 0.08
PDLIM5-210ENST00000508216 CCDC136Q96JN2 1154 aa15.53■□□□□ 0.08
PDLIM5-210ENST00000508216 PDIA4P13667 645 aaKnown RBP15.52■□□□□ 0.08
PDLIM5-210ENST00000508216 GLIPR1L2Q4G1C9 344 aa15.51■□□□□ 0.07
PDLIM5-210ENST00000508216 RBM19Q9Y4C8 960 aaKnown RBP15.5■□□□□ 0.07
PDLIM5-210ENST00000508216 PDE4CQ08493 712 aa15.48■□□□□ 0.07
PDLIM5-210ENST00000508216 FGD1P98174 961 aa15.44■□□□□ 0.06
PDLIM5-210ENST00000508216 ZNF316A6NFI3 1004 aaPredicted RBP15.36■□□□□ 0.05
PDLIM5-210ENST00000508216 KLHL34Q8N239 644 aa15.36■□□□□ 0.05
PDLIM5-210ENST00000508216 DSG3P32926 999 aa15.35■□□□□ 0.05
PDLIM5-210ENST00000508216 POLA2Q14181 598 aa15.33■□□□□ 0.04
PDLIM5-210ENST00000508216 AAMPQ13685 434 aa15.31■□□□□ 0.04
PDLIM5-210ENST00000508216 ZMYND15Q9H091 742 aa15.31■□□□□ 0.04
PDLIM5-210ENST00000508216 C11orf95C9JLR9 678 aaPredicted RBP15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms