RNA–Protein interactions for RNA: ENST00000504531.2

CASC9-201, Transcript of cancer susceptibility 9, humanhuman

TSL 1 (best) BASIC

Gene CASC9, Length 1,164 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC9-201ENST00000504531 ST18O60284 1047 aa13.19□□□□□ -0.3
CASC9-201ENST00000504531 TBC1D12O60347 775 aa13.18□□□□□ -0.3
CASC9-201ENST00000504531 PTCD2Q8WV60 388 aaKnown RBP13.18□□□□□ -0.3
CASC9-201ENST00000504531 HOXB1P14653 301 aaPredicted RBP13.16□□□□□ -0.3
CASC9-201ENST00000504531 CAMK2BQ13554 666 aa13.16□□□□□ -0.3
CASC9-201ENST00000504531 VSIG10Q8N0Z9 540 aa13.16□□□□□ -0.3
CASC9-201ENST00000504531 PCDHGA4Q9Y5G9 962 aa13.15□□□□□ -0.3
CASC9-201ENST00000504531 ARAP1Q96P48 1450 aa13.15□□□□□ -0.3
CASC9-201ENST00000504531 URB2Q14146 1524 aaKnown RBP13.14□□□□□ -0.31
CASC9-201ENST00000504531 E2F4Q16254 413 aa13.14□□□□□ -0.31
CASC9-201ENST00000504531 GPR153Q6NV75 609 aa13.14□□□□□ -0.31
CASC9-201ENST00000504531 OXER1Q8TDS5 423 aa13.14□□□□□ -0.31
CASC9-201ENST00000504531 IGF1RP08069 1367 aa13.14□□□□□ -0.31
CASC9-201ENST00000504531 LCE2DQ5TA82 110 aaPredicted RBP13.12□□□□□ -0.31
CASC9-201ENST00000504531 ARSIQ5FYB1 569 aa13.11□□□□□ -0.31
CASC9-201ENST00000504531 RIMBP3CA6NJZ7 1639 aa13.1□□□□□ -0.31
CASC9-201ENST00000504531 RIMBP3BA6NNM3 1639 aa13.1□□□□□ -0.31
CASC9-201ENST00000504531 RIMBP3Q9UFD9 1639 aa13.1□□□□□ -0.31
CASC9-201ENST00000504531 UPF1Q92900 1129 aaKnown RBP eCLIP13.1□□□□□ -0.31
CASC9-201ENST00000504531 DNMBPQ6XZF7 1577 aa13.1□□□□□ -0.31
CASC9-201ENST00000504531 EMILIN3Q9NT22 766 aa13.09□□□□□ -0.31
CASC9-201ENST00000504531 RRBP1Q9P2E9 1410 aaKnown RBP13.09□□□□□ -0.31
CASC9-201ENST00000504531 ZNF608Q9ULD9 1512 aaPredicted RBP13.08□□□□□ -0.31
CASC9-201ENST00000504531 MAP3K9P80192 1104 aa13.08□□□□□ -0.32
CASC9-201ENST00000504531 P3H3Q8IVL6 736 aa13.08□□□□□ -0.32
CASC9-201ENST00000504531 FGD5Q6ZNL6 1462 aa13.08□□□□□ -0.32
CASC9-201ENST00000504531 ARHGAP35Q9NRY4 1499 aa13.08□□□□□ -0.32
CASC9-201ENST00000504531 CARMIL1Q5VZK9 1371 aa13.07□□□□□ -0.32
CASC9-201ENST00000504531 ZNF316A6NFI3 1004 aaPredicted RBP13.07□□□□□ -0.32
CASC9-201ENST00000504531 ARHGEF11O15085 1522 aa13.07□□□□□ -0.32
CASC9-201ENST00000504531 ABCA10Q8WWZ4 1543 aa13.07□□□□□ -0.32
CASC9-201ENST00000504531 IFT140Q96RY7 1462 aa13.06□□□□□ -0.32
CASC9-201ENST00000504531 EMP3P54852 163 aa13.06□□□□□ -0.32
CASC9-201ENST00000504531 KDM2AQ9Y2K7 1162 aa13.05□□□□□ -0.32
CASC9-201ENST00000504531 ARIH1Q9Y4X5 557 aaPredicted RBP13.05□□□□□ -0.32
CASC9-201ENST00000504531 NUDT7P0C024 238 aa13.04□□□□□ -0.32
CASC9-201ENST00000504531 PLSCR2Q9NRY7 297 aa13.04□□□□□ -0.32
CASC9-201ENST00000504531 MARVELD3Q96A59 401 aa13.03□□□□□ -0.32
CASC9-201ENST00000504531 FHAD1B1AJZ9 1412 aa13.03□□□□□ -0.32
CASC9-201ENST00000504531 CUL7Q14999 1698 aa13.02□□□□□ -0.32
CASC9-201ENST00000504531 KHSRPQ92945 711 aaKnown RBP eCLIP13.02□□□□□ -0.33
CASC9-201ENST00000504531 EFCAB5A4FU69 1503 aa13□□□□□ -0.33
CASC9-201ENST00000504531 AQRO60306 1485 aaKnown RBP eCLIP13□□□□□ -0.33
CASC9-201ENST00000504531 DPYSL4O14531 572 aa13□□□□□ -0.33
CASC9-201ENST00000504531 ARHGEF1Q92888 912 aaKnown RBP13□□□□□ -0.33
CASC9-201ENST00000504531 TOPBP1Q92547 1522 aa12.99□□□□□ -0.33
CASC9-201ENST00000504531 ERBB3P21860 1342 aa12.99□□□□□ -0.33
CASC9-201ENST00000504531 KDM4FA0A1W2PPD8 638 aa12.99□□□□□ -0.33
CASC9-201ENST00000504531 EVI5O60447 810 aa12.99□□□□□ -0.33
CASC9-201ENST00000504531 PSDA5PKW4 1024 aaPredicted RBP12.98□□□□□ -0.33
CASC9-201ENST00000504531 POTEMA6NI47 508 aa12.98□□□□□ -0.33
CASC9-201ENST00000504531 POTEGQ6S5H5 508 aa12.98□□□□□ -0.33
CASC9-201ENST00000504531 KCNV2Q8TDN2 545 aa12.98□□□□□ -0.33
CASC9-201ENST00000504531 SPDYE16A6NNV3 312 aaPredicted RBP12.97□□□□□ -0.33
CASC9-201ENST00000504531 DIEXFQ68CQ4 756 aaKnown RBP12.97□□□□□ -0.33
CASC9-201ENST00000504531 CHMP7Q8WUX9 453 aaPredicted RBP12.97□□□□□ -0.33
CASC9-201ENST00000504531 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.96□□□□□ -0.33
CASC9-201ENST00000504531 TIAM1Q13009 1591 aa12.96□□□□□ -0.33
CASC9-201ENST00000504531 FAM205CA6NFA0 338 aa12.96□□□□□ -0.33
CASC9-201ENST00000504531 SLC24A1O60721 1099 aa12.96□□□□□ -0.33
CASC9-201ENST00000504531 ANO8Q9HCE9 1232 aaPredicted RBP12.96□□□□□ -0.33
CASC9-201ENST00000504531 POLA1P09884 1462 aaPredicted RBP12.96□□□□□ -0.34
CASC9-201ENST00000504531 CCNB3Q8WWL7 1395 aa12.95□□□□□ -0.34
CASC9-201ENST00000504531 PDIA6Q15084 440 aa12.95□□□□□ -0.34
CASC9-201ENST00000504531 LHX6Q9UPM6 363 aa12.95□□□□□ -0.34
CASC9-201ENST00000504531 WDR97A6NE52 1622 aa12.93□□□□□ -0.34
CASC9-201ENST00000504531 KANK4Q5T7N3 995 aaPredicted RBP12.93□□□□□ -0.34
CASC9-201ENST00000504531 HS3ST6Q96QI5 342 aa12.93□□□□□ -0.34
CASC9-201ENST00000504531 VARS2Q5ST30 1063 aaKnown RBP12.92□□□□□ -0.34
CASC9-201ENST00000504531 TDRD9Q8NDG6 1382 aaKnown RBP12.92□□□□□ -0.34
CASC9-201ENST00000504531 LRRC9Q6ZRR7 1453 aa12.91□□□□□ -0.34
CASC9-201ENST00000504531 CFAP43Q8NDM7 1665 aa12.91□□□□□ -0.34
CASC9-201ENST00000504531 DHX57Q6P158 1386 aaKnown RBP12.91□□□□□ -0.34
CASC9-201ENST00000504531 FYCO1Q9BQS8 1478 aa12.91□□□□□ -0.34
CASC9-201ENST00000504531 TTBK1Q5TCY1 1321 aaPredicted RBP12.9□□□□□ -0.34
CASC9-201ENST00000504531 CASKIN1Q8WXD9 1431 aa12.89□□□□□ -0.35
CASC9-201ENST00000504531 CTTNBP2Q8WZ74 1663 aa12.89□□□□□ -0.35
CASC9-201ENST00000504531 CENPBP07199 599 aaPredicted RBP12.88□□□□□ -0.35
CASC9-201ENST00000504531 PTGER2P43116 358 aa12.88□□□□□ -0.35
CASC9-201ENST00000504531 PPP4R3BQ5MIZ7 849 aa12.88□□□□□ -0.35
CASC9-201ENST00000504531 JPH4Q96JJ6 628 aa12.88□□□□□ -0.35
CASC9-201ENST00000504531 ABCA5Q8WWZ7 1642 aa12.88□□□□□ -0.35
CASC9-201ENST00000504531 FMN1Q68DA7 1419 aa12.88□□□□□ -0.35
CASC9-201ENST00000504531 EIF4G3O43432 1585 aaKnown RBP12.87□□□□□ -0.35
CASC9-201ENST00000504531 TIMELESSQ9UNS1 1208 aa12.86□□□□□ -0.35
CASC9-201ENST00000504531 FOSBP53539 338 aa12.85□□□□□ -0.35
CASC9-201ENST00000504531 ZNF687Q8N1G0 1237 aa12.85□□□□□ -0.35
CASC9-201ENST00000504531 ZNF454Q8N9F8 522 aa12.85□□□□□ -0.35
CASC9-201ENST00000504531 PCDH10Q9P2E7 1040 aa12.85□□□□□ -0.35
CASC9-201ENST00000504531 RAD54L2Q9Y4B4 1467 aa12.85□□□□□ -0.35
CASC9-201ENST00000504531 ACIN1Q9UKV3 1341 aaKnown RBP12.84□□□□□ -0.35
CASC9-201ENST00000504531 PHF14O94880 888 aa12.83□□□□□ -0.36
CASC9-201ENST00000504531 SAMD9Q5K651 1589 aa12.82□□□□□ -0.36
CASC9-201ENST00000504531 POTEB3A0JP26 581 aa12.82□□□□□ -0.36
CASC9-201ENST00000504531 POTEBQ6S5H4 581 aa12.82□□□□□ -0.36
CASC9-201ENST00000504531 EPAS1Q99814 870 aa12.82□□□□□ -0.36
CASC9-201ENST00000504531 GAPVD1Q14C86 1478 aa12.82□□□□□ -0.36
CASC9-201ENST00000504531 RANGAP1P46060 587 aaPredicted RBP12.81□□□□□ -0.36
CASC9-201ENST00000504531 SETD5Q9C0A6 1442 aa12.8□□□□□ -0.36
CASC9-201ENST00000504531 CHD1O14646 1710 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms