RNA–Protein interactions for RNA: ENST00000474412.1

VPS50-211, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-211ENST00000474412 CFTRP13569 1480 aa12.94□□□□□ -0.34
VPS50-211ENST00000474412 P3H3Q8IVL6 736 aa12.94□□□□□ -0.34
VPS50-211ENST00000474412 VSIG10Q8N0Z9 540 aa12.94□□□□□ -0.34
VPS50-211ENST00000474412 KCNV2Q8TDN2 545 aa12.94□□□□□ -0.34
VPS50-211ENST00000474412 FANCD2Q9BXW9 1451 aa12.93□□□□□ -0.34
VPS50-211ENST00000474412 ANO8Q9HCE9 1232 aaPredicted RBP12.93□□□□□ -0.34
VPS50-211ENST00000474412 KDM2AQ9Y2K7 1162 aa12.93□□□□□ -0.34
VPS50-211ENST00000474412 PPP4R3BQ5MIZ7 849 aa12.92□□□□□ -0.34
VPS50-211ENST00000474412 ZNF687Q8N1G0 1237 aa12.92□□□□□ -0.34
VPS50-211ENST00000474412 CCDC88BA6NC98 1476 aa12.91□□□□□ -0.34
VPS50-211ENST00000474412 ZNF454Q8N9F8 522 aa12.91□□□□□ -0.34
VPS50-211ENST00000474412 ARIH1Q9Y4X5 557 aaPredicted RBP12.91□□□□□ -0.34
VPS50-211ENST00000474412 SPDYE16A6NNV3 312 aaPredicted RBP12.9□□□□□ -0.34
VPS50-211ENST00000474412 PDIA6Q15084 440 aa12.9□□□□□ -0.34
VPS50-211ENST00000474412 ARHGEF1Q92888 912 aaKnown RBP12.88□□□□□ -0.35
VPS50-211ENST00000474412 JPH4Q96JJ6 628 aa12.88□□□□□ -0.35
VPS50-211ENST00000474412 URB2Q14146 1524 aaKnown RBP12.88□□□□□ -0.35
VPS50-211ENST00000474412 FOSBP53539 338 aa12.86□□□□□ -0.35
VPS50-211ENST00000474412 DDX12PQ92771 950 aa12.83□□□□□ -0.36
VPS50-211ENST00000474412 PHF14O94880 888 aa12.82□□□□□ -0.36
VPS50-211ENST00000474412 PBX2P40425 430 aa12.81□□□□□ -0.36
VPS50-211ENST00000474412 ZDHHC16Q969W1 377 aa12.81□□□□□ -0.36
VPS50-211ENST00000474412 KRTAP3-3Q9BYR6 98 aa12.81□□□□□ -0.36
VPS50-211ENST00000474412 KRTAP3-2Q9BYR7 98 aa12.81□□□□□ -0.36
VPS50-211ENST00000474412 PTGER2P43116 358 aa12.8□□□□□ -0.36
VPS50-211ENST00000474412 TYW1BQ6NUM6 668 aa12.8□□□□□ -0.36
VPS50-211ENST00000474412 KCNH8Q96L42 1107 aa12.8□□□□□ -0.36
VPS50-211ENST00000474412 AXIN2Q9Y2T1 843 aa12.8□□□□□ -0.36
VPS50-211ENST00000474412 PCDHGA10Q9Y5H3 936 aa12.8□□□□□ -0.36
VPS50-211ENST00000474412 FBXW7Q969H0 707 aa12.78□□□□□ -0.36
VPS50-211ENST00000474412 EPAS1Q99814 870 aa12.78□□□□□ -0.36
VPS50-211ENST00000474412 GRXCR2A6NFK2 248 aa12.77□□□□□ -0.37
VPS50-211ENST00000474412 ARHGAP33O14559 1287 aa12.77□□□□□ -0.37
VPS50-211ENST00000474412 NBR1Q14596 966 aa12.77□□□□□ -0.37
VPS50-211ENST00000474412 POTEEQ6S8J3 1075 aa12.77□□□□□ -0.37
VPS50-211ENST00000474412 KCNK17Q96T54 332 aa12.77□□□□□ -0.37
VPS50-211ENST00000474412 ADAM33Q9BZ11 813 aa12.77□□□□□ -0.37
VPS50-211ENST00000474412 BCL2L12Q9HB09 334 aa12.77□□□□□ -0.37
VPS50-211ENST00000474412 PTPREP23469 700 aa12.75□□□□□ -0.37
VPS50-211ENST00000474412 DNMBPQ6XZF7 1577 aa12.75□□□□□ -0.37
VPS50-211ENST00000474412 TOPBP1Q92547 1522 aa12.75□□□□□ -0.37
VPS50-211ENST00000474412 PSEN2P49810 448 aa12.74□□□□□ -0.37
VPS50-211ENST00000474412 LSM11P83369 360 aaKnown RBP eCLIP12.74□□□□□ -0.37
VPS50-211ENST00000474412 ANKRD13DQ6ZTN6 518 aa12.73□□□□□ -0.37
VPS50-211ENST00000474412 RBM33Q96EV2 1170 aaKnown RBP12.73□□□□□ -0.37
VPS50-211ENST00000474412 EIF4G3O43432 1585 aaKnown RBP12.73□□□□□ -0.37
VPS50-211ENST00000474412 TARBP1Q13395 1621 aaKnown RBP12.7□□□□□ -0.38
VPS50-211ENST00000474412 MAP3K7O43318 606 aa12.69□□□□□ -0.38
VPS50-211ENST00000474412 EN1Q05925 392 aaPredicted RBP12.69□□□□□ -0.38
VPS50-211ENST00000474412 DMRTA1Q5VZB9 504 aa12.69□□□□□ -0.38
VPS50-211ENST00000474412 WDR97A6NE52 1622 aa12.69□□□□□ -0.38
VPS50-211ENST00000474412 CHD1O14646 1710 aa12.68□□□□□ -0.38
VPS50-211ENST00000474412 ZNF608Q9ULD9 1512 aaPredicted RBP12.68□□□□□ -0.38
VPS50-211ENST00000474412 SEMA3EO15041 775 aa12.68□□□□□ -0.38
VPS50-211ENST00000474412 MLLT3P42568 568 aaPredicted RBP12.68□□□□□ -0.38
VPS50-211ENST00000474412 SLC24A1O60721 1099 aa12.67□□□□□ -0.38
VPS50-211ENST00000474412 C6orf132Q5T0Z8 1188 aa12.65□□□□□ -0.38
VPS50-211ENST00000474412 PPP1R3GB7ZBB8 358 aa12.64□□□□□ -0.39
VPS50-211ENST00000474412 OSBPP22059 807 aa12.64□□□□□ -0.39
VPS50-211ENST00000474412 SPNS2Q8IVW8 549 aa12.64□□□□□ -0.39
VPS50-211ENST00000474412 TSR1Q2NL82 804 aaKnown RBP12.63□□□□□ -0.39
VPS50-211ENST00000474412 ADGRD1Q6QNK2 874 aa12.63□□□□□ -0.39
VPS50-211ENST00000474412 IFT140Q96RY7 1462 aa12.63□□□□□ -0.39
VPS50-211ENST00000474412 CUX1P39880 1505 aa12.62□□□□□ -0.39
VPS50-211ENST00000474412 POLA1P09884 1462 aaPredicted RBP12.62□□□□□ -0.39
VPS50-211ENST00000474412 PRIM1P49642 420 aaKnown RBP12.62□□□□□ -0.39
VPS50-211ENST00000474412 TK2O00142 265 aa12.61□□□□□ -0.39
VPS50-211ENST00000474412 COL9A1P20849 921 aa12.61□□□□□ -0.39
VPS50-211ENST00000474412 PBRM1Q86U86 1689 aa12.61□□□□□ -0.39
VPS50-211ENST00000474412 ABCC8Q09428 1581 aa12.6□□□□□ -0.39
VPS50-211ENST00000474412 TESPA1A2RU30 521 aaPredicted RBP12.59□□□□□ -0.39
VPS50-211ENST00000474412 SUPT5HO00267 1087 aaKnown RBP12.59□□□□□ -0.39
VPS50-211ENST00000474412 SMYD5Q6GMV2 418 aa12.59□□□□□ -0.39
VPS50-211ENST00000474412 ZBED2Q9BTP6 218 aa12.59□□□□□ -0.39
VPS50-211ENST00000474412 FGD5Q6ZNL6 1462 aa12.59□□□□□ -0.39
VPS50-211ENST00000474412 VPS9D1Q9Y2B5 631 aa12.58□□□□□ -0.4
VPS50-211ENST00000474412 SLC4A5Q9BY07 1137 aa12.57□□□□□ -0.4
VPS50-211ENST00000474412 CDHR5Q9HBB8 845 aa12.57□□□□□ -0.4
VPS50-211ENST00000474412 RAD54L2Q9Y4B4 1467 aa12.57□□□□□ -0.4
VPS50-211ENST00000474412 STAC3Q96MF2 364 aa12.56□□□□□ -0.4
VPS50-211ENST00000474412 BIVM-ERCC5R4GMW8 1640 aa12.55□□□□□ -0.4
VPS50-211ENST00000474412 PROX2Q3B8N5 592 aa12.55□□□□□ -0.4
VPS50-211ENST00000474412 SYNJ1O43426 1573 aa12.53□□□□□ -0.4
VPS50-211ENST00000474412 TULP1O00294 542 aaPredicted RBP12.53□□□□□ -0.4
VPS50-211ENST00000474412 CERKQ8TCT0 537 aa12.53□□□□□ -0.4
VPS50-211ENST00000474412 NUTM2FA1L443 756 aa12.52□□□□□ -0.41
VPS50-211ENST00000474412 MMRN1Q13201 1228 aa12.52□□□□□ -0.41
VPS50-211ENST00000474412 MYT1LQ9UL68 1186 aa12.52□□□□□ -0.41
VPS50-211ENST00000474412 AQRO60306 1485 aaKnown RBP eCLIP12.52□□□□□ -0.41
VPS50-211ENST00000474412 RIMBP3CA6NJZ7 1639 aa12.51□□□□□ -0.41
VPS50-211ENST00000474412 RIMBP3BA6NNM3 1639 aa12.51□□□□□ -0.41
VPS50-211ENST00000474412 ABCA5Q8WWZ7 1642 aa12.51□□□□□ -0.41
VPS50-211ENST00000474412 RIMBP3Q9UFD9 1639 aa12.51□□□□□ -0.41
VPS50-211ENST00000474412 HRO43593 1189 aa12.51□□□□□ -0.41
VPS50-211ENST00000474412 TRIM6-TRIM34B2RNG4 842 aa12.5□□□□□ -0.41
VPS50-211ENST00000474412 NBPF3Q9H094 633 aa12.49□□□□□ -0.41
VPS50-211ENST00000474412 RBM26Q5T8P6 1007 aaKnown RBP12.48□□□□□ -0.41
VPS50-211ENST00000474412 RNF166Q96A37 237 aaPredicted RBP12.48□□□□□ -0.41
VPS50-211ENST00000474412 CDCA7LQ96GN5 454 aa12.48□□□□□ -0.41
VPS50-211ENST00000474412 RABGEF1Q9UJ41 708 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms