RNA–Protein interactions for RNA: ENST00000474412.1

VPS50-211, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-211ENST00000474412 AEBP2Q6ZN18 517 aaPredicted RBP29.25■■■□□ 2.27
VPS50-211ENST00000474412 CHIC1Q5VXU3 224 aa28.43■■■□□ 2.14
VPS50-211ENST00000474412 PHF23Q9BUL5 403 aaPredicted RBP24.94■■□□□ 1.58
VPS50-211ENST00000474412 SENP3Q9H4L4 574 aaPredicted RBP24.91■■□□□ 1.58
VPS50-211ENST00000474412 FOXD1Q16676 465 aa23.1■■□□□ 1.29
VPS50-211ENST00000474412 PLPPR3Q6T4P5 718 aa23.03■■□□□ 1.28
VPS50-211ENST00000474412 ADRA2BP18089 450 aa22.08■■□□□ 1.13
VPS50-211ENST00000474412 PPP6R1Q9UPN7 881 aa22.07■■□□□ 1.12
VPS50-211ENST00000474412 PIAS4Q8N2W9 510 aaPredicted RBP21.81■■□□□ 1.08
VPS50-211ENST00000474412 MSH5O43196 834 aa21.42■■□□□ 1.02
VPS50-211ENST00000474412 PPP4R3CPQ6ZMV5 832 aa20.27■□□□□ 0.84
VPS50-211ENST00000474412 SCAF1Q9H7N4 1312 aaKnown RBP20.25■□□□□ 0.83
VPS50-211ENST00000474412 MAPK8IP2Q13387 824 aaPredicted RBP20.07■□□□□ 0.8
VPS50-211ENST00000474412 POTEDQ86YR6 584 aa20.07■□□□□ 0.8
VPS50-211ENST00000474412 DMRT2Q9Y5R5 561 aa19.83■□□□□ 0.77
VPS50-211ENST00000474412 CNKSR2Q8WXI2 1034 aa19.75■□□□□ 0.75
VPS50-211ENST00000474412 NCBP3Q53F19 620 aaKnown RBP19.73■□□□□ 0.75
VPS50-211ENST00000474412 KCNA4P22459 653 aa19.6■□□□□ 0.73
VPS50-211ENST00000474412 RNF216Q9NWF9 866 aaPredicted RBP19.39■□□□□ 0.69
VPS50-211ENST00000474412 NPM3O75607 178 aaKnown RBP19.38■□□□□ 0.69
VPS50-211ENST00000474412 HOXD11P31277 338 aaPredicted RBP19.33■□□□□ 0.68
VPS50-211ENST00000474412 DCAF8L1A6NGE4 600 aa19.09■□□□□ 0.65
VPS50-211ENST00000474412 DNAJC5BQ9UF47 199 aa18.78■□□□□ 0.6
VPS50-211ENST00000474412 SLC4A1APQ9BWU0 796 aaKnown RBP18.66■□□□□ 0.58
VPS50-211ENST00000474412 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.51■□□□□ 0.55
VPS50-211ENST00000474412 SLC4A2P04920 1241 aa18.32■□□□□ 0.52
VPS50-211ENST00000474412 RNF39Q9H2S5 420 aa18.3■□□□□ 0.52
VPS50-211ENST00000474412 U3KPZ7 1027 aaPredicted RBP18.13■□□□□ 0.49
VPS50-211ENST00000474412 FOXD4L1Q9NU39 408 aa18.1■□□□□ 0.49
VPS50-211ENST00000474412 C1QBPQ07021 282 aaKnown RBP18.08■□□□□ 0.48
VPS50-211ENST00000474412 CACNB1Q02641 598 aaPredicted RBP18.02■□□□□ 0.48
VPS50-211ENST00000474412 ZBTB22O15209 634 aa18■□□□□ 0.47
VPS50-211ENST00000474412 MYCNP04198 464 aaPredicted RBP17.96■□□□□ 0.47
VPS50-211ENST00000474412 EHMT2Q96KQ7 1210 aa17.96■□□□□ 0.47
VPS50-211ENST00000474412 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.89■□□□□ 0.45
VPS50-211ENST00000474412 HNRNPUL2Q1KMD3 747 aaKnown RBP17.89■□□□□ 0.45
VPS50-211ENST00000474412 SAMD1Q6SPF0 538 aaPredicted RBP17.81■□□□□ 0.44
VPS50-211ENST00000474412 APLP2Q06481 763 aa17.77■□□□□ 0.44
VPS50-211ENST00000474412 CSRNP3Q8WYN3 585 aa17.75■□□□□ 0.43
VPS50-211ENST00000474412 SPINK5Q9NQ38 1064 aaPredicted RBP17.69■□□□□ 0.42
VPS50-211ENST00000474412 CAPN15O75808 1086 aa17.68■□□□□ 0.42
VPS50-211ENST00000474412 TRHP20396 242 aaPredicted RBP17.55■□□□□ 0.4
VPS50-211ENST00000474412 ZNF219Q9P2Y4 722 aaPredicted RBP17.54■□□□□ 0.4
VPS50-211ENST00000474412 ATXN8OSP0DMR3 200 aa17.47■□□□□ 0.39
VPS50-211ENST00000474412 ATF5Q9Y2D1 282 aaPredicted RBP17.44■□□□□ 0.38
VPS50-211ENST00000474412 NISCHQ9Y2I1 1504 aa17.38■□□□□ 0.37
VPS50-211ENST00000474412 DSG3P32926 999 aa17.35■□□□□ 0.37
VPS50-211ENST00000474412 ABCB7O75027 752 aa17.33■□□□□ 0.36
VPS50-211ENST00000474412 POLA2Q14181 598 aa17.18■□□□□ 0.34
VPS50-211ENST00000474412 ZBTB12Q9Y330 459 aaPredicted RBP16.93■□□□□ 0.3
VPS50-211ENST00000474412 FBLN2P98095 1184 aa16.81■□□□□ 0.28
VPS50-211ENST00000474412 MKRN4PQ13434 485 aaPredicted RBP16.66■□□□□ 0.26
VPS50-211ENST00000474412 OSCARQ8IYS5 282 aa16.63■□□□□ 0.25
VPS50-211ENST00000474412 RBM42Q9BTD8 480 aaKnown RBP16.6■□□□□ 0.25
VPS50-211ENST00000474412 SPDYE2BA6NHP3 402 aa16.44■□□□□ 0.22
VPS50-211ENST00000474412 SPDYE6P0CI01 402 aa16.44■□□□□ 0.22
VPS50-211ENST00000474412 SPDYE2Q495Y8 402 aa16.44■□□□□ 0.22
VPS50-211ENST00000474412 ZNF692Q9BU19 519 aaPredicted RBP16.35■□□□□ 0.21
VPS50-211ENST00000474412 AKT1S1Q96B36 256 aa16.33■□□□□ 0.2
VPS50-211ENST00000474412 SPDYE4A6NLX3 237 aa16.26■□□□□ 0.19
VPS50-211ENST00000474412 SSUH2Q9Y2M2 353 aa16.25■□□□□ 0.19
VPS50-211ENST00000474412 REM2Q8IYK8 340 aaPredicted RBP16.16■□□□□ 0.18
VPS50-211ENST00000474412 FKBP8Q14318 412 aa16.13■□□□□ 0.17
VPS50-211ENST00000474412 PABPN1Q86U42 306 aaKnown RBP eCLIP16.13■□□□□ 0.17
VPS50-211ENST00000474412 SPDYE1Q8NFV5 336 aaPredicted RBP16.01■□□□□ 0.15
VPS50-211ENST00000474412 PITPNM1O00562 1244 aa15.99■□□□□ 0.15
VPS50-211ENST00000474412 CLEC11AQ9Y240 323 aa15.97■□□□□ 0.15
VPS50-211ENST00000474412 CHRDL2Q6WN34 429 aa15.96■□□□□ 0.15
VPS50-211ENST00000474412 PROM2Q8N271 834 aa15.89■□□□□ 0.13
VPS50-211ENST00000474412 STAG3Q9UJ98 1225 aa15.84■□□□□ 0.13
VPS50-211ENST00000474412 POTEHQ6S545 545 aa15.81■□□□□ 0.12
VPS50-211ENST00000474412 PRR29P0C7W0 189 aa15.78■□□□□ 0.12
VPS50-211ENST00000474412 PIP4P2Q8N4L2 257 aa15.71■□□□□ 0.11
VPS50-211ENST00000474412 FXR2P51116 673 aaKnown RBP eCLIP15.7■□□□□ 0.1
VPS50-211ENST00000474412 CCDC180Q9P1Z9 1646 aa15.67■□□□□ 0.1
VPS50-211ENST00000474412 PRKAR2AP13861 404 aaKnown RBP15.6■□□□□ 0.09
VPS50-211ENST00000474412 FBXO3Q9UK99 471 aa15.6■□□□□ 0.09
VPS50-211ENST00000474412 CHADLQ6NUI6 762 aa15.56■□□□□ 0.08
VPS50-211ENST00000474412 CREBZFQ9NS37 354 aa15.49■□□□□ 0.07
VPS50-211ENST00000474412 MIER1Q8N108 512 aa15.46■□□□□ 0.07
VPS50-211ENST00000474412 PLEKHG5O94827 1062 aa15.45■□□□□ 0.06
VPS50-211ENST00000474412 PLCD3Q8N3E9 789 aa15.45■□□□□ 0.06
VPS50-211ENST00000474412 VASPP50552 380 aaPredicted RBP15.39■□□□□ 0.05
VPS50-211ENST00000474412 FARP1Q9Y4F1 1045 aaPredicted RBP15.38■□□□□ 0.05
VPS50-211ENST00000474412 ABCC9O60706 1549 aa15.38■□□□□ 0.05
VPS50-211ENST00000474412 HAX1O00165 279 aa15.29■□□□□ 0.04
VPS50-211ENST00000474412 NPM1P06748 294 aaKnown RBP eCLIP15.29■□□□□ 0.04
VPS50-211ENST00000474412 MNX1P50219 401 aaPredicted RBP15.27■□□□□ 0.04
VPS50-211ENST00000474412 ZBTB47Q9UFB7 747 aaPredicted RBP15.27■□□□□ 0.04
VPS50-211ENST00000474412 KLHL34Q8N239 644 aa15.21■□□□□ 0.03
VPS50-211ENST00000474412 C19orf67A6NJJ6 358 aa15.17■□□□□ 0.02
VPS50-211ENST00000474412 CD44P16070 742 aaKnown RBP15.15■□□□□ 0.02
VPS50-211ENST00000474412 IFNLR1Q8IU57 520 aaPredicted RBP15.12■□□□□ 0.01
VPS50-211ENST00000474412 PAK3O75914 559 aaPredicted RBP15.11■□□□□ 0.01
VPS50-211ENST00000474412 EVX2Q03828 476 aa15.06■□□□□ 0
VPS50-211ENST00000474412 ZRANB1Q9UGI0 708 aa15.05■□□□□ -0
VPS50-211ENST00000474412 TSPYL2Q9H2G4 693 aaPredicted RBP15.03■□□□□ -0
VPS50-211ENST00000474412 NUBP1P53384 320 aa15.02■□□□□ -0
VPS50-211ENST00000474412 RASEFQ8IZ41 740 aa15.02■□□□□ -0
VPS50-211ENST00000474412 SPOCK2Q92563 424 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms