RNA–Protein interactions for RNA: ENST00000449234.1

RFX3-208, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 633 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-208ENST00000449234 SPINK5Q9NQ38 1064 aaPredicted RBP15.74■□□□□ 0.11
RFX3-208ENST00000449234 MAST1Q9Y2H9 1570 aa15.74■□□□□ 0.11
RFX3-208ENST00000449234 CCDC141Q6ZP82 1450 aa15.73■□□□□ 0.11
RFX3-208ENST00000449234 USP47Q96K76 1375 aa15.72■□□□□ 0.11
RFX3-208ENST00000449234 MRS2Q9HD23 443 aa15.71■□□□□ 0.11
RFX3-208ENST00000449234 KIF15Q9NS87 1388 aa15.71■□□□□ 0.11
RFX3-208ENST00000449234 KDM5CP41229 1560 aa15.7■□□□□ 0.1
RFX3-208ENST00000449234 SHROOM2Q13796 1616 aa15.69■□□□□ 0.1
RFX3-208ENST00000449234 PREX2Q70Z35 1606 aa15.69■□□□□ 0.1
RFX3-208ENST00000449234 DHX29Q7Z478 1369 aaKnown RBP15.68■□□□□ 0.1
RFX3-208ENST00000449234 ZBTB22O15209 634 aa15.68■□□□□ 0.1
RFX3-208ENST00000449234 CAPN15O75808 1086 aa15.67■□□□□ 0.1
RFX3-208ENST00000449234 PPP4R2Q9NY27 417 aa15.67■□□□□ 0.1
RFX3-208ENST00000449234 HNRNPMP52272 730 aaKnown RBP eCLIP15.66■□□□□ 0.1
RFX3-208ENST00000449234 SAMD9LQ8IVG5 1584 aa15.65■□□□□ 0.1
RFX3-208ENST00000449234 CDC42BPBQ9Y5S2 1711 aa15.65■□□□□ 0.1
RFX3-208ENST00000449234 BCANQ96GW7 911 aa15.64■□□□□ 0.09
RFX3-208ENST00000449234 STAC3Q96MF2 364 aa15.64■□□□□ 0.09
RFX3-208ENST00000449234 RALBP1Q15311 655 aa15.63■□□□□ 0.09
RFX3-208ENST00000449234 CARD11Q9BXL7 1154 aa15.63■□□□□ 0.09
RFX3-208ENST00000449234 ATP10AO60312 1499 aa15.63■□□□□ 0.09
RFX3-208ENST00000449234 UNC13BO14795 1591 aa15.62■□□□□ 0.09
RFX3-208ENST00000449234 PLXNC1O60486 1568 aa15.62■□□□□ 0.09
RFX3-208ENST00000449234 CCDC184Q52MB2 194 aa15.62■□□□□ 0.09
RFX3-208ENST00000449234 UHRF1BP1LA0JNW5 1464 aa15.62■□□□□ 0.09
RFX3-208ENST00000449234 BCORL1Q5H9F3 1711 aa15.62■□□□□ 0.09
RFX3-208ENST00000449234 ABCC2Q92887 1545 aa15.62■□□□□ 0.09
RFX3-208ENST00000449234 FAM135AQ9P2D6 1515 aa15.62■□□□□ 0.09
RFX3-208ENST00000449234 WASHC2CQ9Y4E1 1318 aa15.62■□□□□ 0.09
RFX3-208ENST00000449234 SMG6Q86US8 1419 aaKnown RBP15.61■□□□□ 0.09
RFX3-208ENST00000449234 FAM9BQ8IZU0 186 aa15.61■□□□□ 0.09
RFX3-208ENST00000449234 ZNF219Q9P2Y4 722 aaPredicted RBP15.61■□□□□ 0.09
RFX3-208ENST00000449234 DSG3P32926 999 aa15.6■□□□□ 0.09
RFX3-208ENST00000449234 LAMC1P11047 1609 aa15.6■□□□□ 0.09
RFX3-208ENST00000449234 GPRASP1Q5JY77 1395 aa15.6■□□□□ 0.09
RFX3-208ENST00000449234 DUOX2Q9NRD8 1548 aa15.59■□□□□ 0.09
RFX3-208ENST00000449234 BRD4O60885 1362 aaPredicted RBP15.59■□□□□ 0.09
RFX3-208ENST00000449234 INSRP06213 1382 aa15.58■□□□□ 0.08
RFX3-208ENST00000449234 CCDC144AA2RUR9 1427 aa15.58■□□□□ 0.08
RFX3-208ENST00000449234 PLCH2O75038 1416 aa15.58■□□□□ 0.08
RFX3-208ENST00000449234 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.58■□□□□ 0.08
RFX3-208ENST00000449234 DCAF11Q8TEB1 546 aa15.57■□□□□ 0.08
RFX3-208ENST00000449234 RBM19Q9Y4C8 960 aaKnown RBP15.57■□□□□ 0.08
RFX3-208ENST00000449234 ERBINQ96RT1 1412 aa15.57■□□□□ 0.08
RFX3-208ENST00000449234 IQGAP3Q86VI3 1631 aa15.57■□□□□ 0.08
RFX3-208ENST00000449234 EFCAB2Q5VUJ9 269 aa15.56■□□□□ 0.08
RFX3-208ENST00000449234 PNISRQ8TF01 805 aaKnown RBP15.56■□□□□ 0.08
RFX3-208ENST00000449234 RNF123Q5XPI4 1314 aa15.56■□□□□ 0.08
RFX3-208ENST00000449234 ARHGAP5Q13017 1502 aa15.56■□□□□ 0.08
RFX3-208ENST00000449234 CHD1O14646 1710 aa15.56■□□□□ 0.08
RFX3-208ENST00000449234 MYO5CQ9NQX4 1742 aa15.55■□□□□ 0.08
RFX3-208ENST00000449234 ARAP3Q8WWN8 1544 aa15.55■□□□□ 0.08
RFX3-208ENST00000449234 MAGI2Q86UL8 1455 aa15.55■□□□□ 0.08
RFX3-208ENST00000449234 PRAG1Q86YV5 1406 aa15.55■□□□□ 0.08
RFX3-208ENST00000449234 RTEL1-TNFRSF6BF6WH68 1400 aa15.54■□□□□ 0.08
RFX3-208ENST00000449234 MYBBP1AQ9BQG0 1328 aaKnown RBP15.54■□□□□ 0.08
RFX3-208ENST00000449234 ST20-MTHFSA0A0A6YYL1 179 aa15.54■□□□□ 0.08
RFX3-208ENST00000449234 ZNF326Q5BKZ1 582 aaKnown RBP15.54■□□□□ 0.08
RFX3-208ENST00000449234 ANP32EQ9BTT0 268 aa15.54■□□□□ 0.08
RFX3-208ENST00000449234 NUDCQ9Y266 331 aa15.54■□□□□ 0.08
RFX3-208ENST00000449234 LRPPRCP42704 1394 aaKnown RBP15.53■□□□□ 0.08
RFX3-208ENST00000449234 TMC1Q8TDI8 760 aa15.53■□□□□ 0.08
RFX3-208ENST00000449234 TRPM1Q7Z4N2 1603 aa15.53■□□□□ 0.08
RFX3-208ENST00000449234 EIF2AK4Q9P2K8 1649 aaKnown RBP15.53■□□□□ 0.08
RFX3-208ENST00000449234 SYCP2Q9BX26 1530 aa15.53■□□□□ 0.08
RFX3-208ENST00000449234 ZMYM4Q5VZL5 1548 aa15.52■□□□□ 0.07
RFX3-208ENST00000449234 FANCIQ9NVI1 1328 aa15.51■□□□□ 0.07
RFX3-208ENST00000449234 PLA2R1Q13018 1463 aa15.51■□□□□ 0.07
RFX3-208ENST00000449234 TTC37Q6PGP7 1564 aa15.5■□□□□ 0.07
RFX3-208ENST00000449234 PDE3BQ13370 1112 aa15.5■□□□□ 0.07
RFX3-208ENST00000449234 KDM2AQ9Y2K7 1162 aa15.5■□□□□ 0.07
RFX3-208ENST00000449234 E9PCH4 1651 aa15.5■□□□□ 0.07
RFX3-208ENST00000449234 SLC24A1O60721 1099 aa15.49■□□□□ 0.07
RFX3-208ENST00000449234 TRHP20396 242 aaPredicted RBP15.49■□□□□ 0.07
RFX3-208ENST00000449234 CLASP1Q7Z460 1538 aa15.48■□□□□ 0.07
RFX3-208ENST00000449234 NLRP13Q86W25 1043 aa15.47■□□□□ 0.07
RFX3-208ENST00000449234 PRDM15P57071 1507 aaPredicted RBP15.47■□□□□ 0.07
RFX3-208ENST00000449234 A2MP01023 1474 aa15.46■□□□□ 0.07
RFX3-208ENST00000449234 PARD3Q8TEW0 1356 aa15.46■□□□□ 0.07
RFX3-208ENST00000449234 PER1O15534 1290 aaPredicted RBP15.44■□□□□ 0.06
RFX3-208ENST00000449234 POLR3GLQ9BT43 218 aa15.44■□□□□ 0.06
RFX3-208ENST00000449234 NEURL4Q96JN8 1562 aa15.44■□□□□ 0.06
RFX3-208ENST00000449234 ABCC1P33527 1531 aa15.43■□□□□ 0.06
RFX3-208ENST00000449234 TMF1P82094 1093 aa15.43■□□□□ 0.06
RFX3-208ENST00000449234 COL17A1Q9UMD9 1497 aaPredicted RBP15.43■□□□□ 0.06
RFX3-208ENST00000449234 ZCCHC11Q5TAX3 1644 aaKnown RBP15.43■□□□□ 0.06
RFX3-208ENST00000449234 ATXN8OSP0DMR3 200 aa15.42■□□□□ 0.06
RFX3-208ENST00000449234 CDCA8Q53HL2 280 aa15.42■□□□□ 0.06
RFX3-208ENST00000449234 PTPRTO14522 1441 aa15.42■□□□□ 0.06
RFX3-208ENST00000449234 WDR7Q9Y4E6 1490 aa15.41■□□□□ 0.06
RFX3-208ENST00000449234 TESK2Q96S53 571 aa15.41■□□□□ 0.06
RFX3-208ENST00000449234 SCAPERQ9BY12 1400 aa15.4■□□□□ 0.06
RFX3-208ENST00000449234 SPAG9O60271 1321 aaKnown RBP15.4■□□□□ 0.06
RFX3-208ENST00000449234 IRX6P78412 446 aaPredicted RBP15.39■□□□□ 0.05
RFX3-208ENST00000449234 ERCC6L2Q5T890 1561 aa15.38■□□□□ 0.05
RFX3-208ENST00000449234 NBPF1Q3BBV0 1214 aa15.38■□□□□ 0.05
RFX3-208ENST00000449234 RGL3Q3MIN7 710 aa15.37■□□□□ 0.05
RFX3-208ENST00000449234 KANK1Q14678 1352 aa15.36■□□□□ 0.05
RFX3-208ENST00000449234 RNF17Q9BXT8 1623 aaKnown RBP15.36■□□□□ 0.05
RFX3-208ENST00000449234 TRAPPC8Q9Y2L5 1435 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms