RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 U2AF1Q01081 240 aaKnown RBP eCLIP11.36□□□□□ -0.59
SYNE1-205ENST00000367251 CENPJQ9HC77 1338 aaPredicted RBP11.35□□□□□ -0.59
SYNE1-205ENST00000367251 LMOD3Q0VAK6 560 aa11.35□□□□□ -0.59
SYNE1-205ENST00000367251 CENPQQ7L2Z9 268 aaPredicted RBP11.35□□□□□ -0.59
SYNE1-205ENST00000367251 DNTTIP2Q5QJE6 756 aaKnown RBP11.35□□□□□ -0.59
SYNE1-205ENST00000367251 SYNJ1O43426 1573 aa11.35□□□□□ -0.59
SYNE1-205ENST00000367251 FANCIQ9NVI1 1328 aa11.34□□□□□ -0.59
SYNE1-205ENST00000367251 CNTLNQ9NXG0 1405 aa11.34□□□□□ -0.59
SYNE1-205ENST00000367251 CFTRP13569 1480 aa11.34□□□□□ -0.59
SYNE1-205ENST00000367251 GGT6Q6P531 493 aa11.34□□□□□ -0.59
SYNE1-205ENST00000367251 NAP1L5Q96NT1 182 aaPredicted RBP11.34□□□□□ -0.59
SYNE1-205ENST00000367251 NRDCO43847 1150 aa11.34□□□□□ -0.59
SYNE1-205ENST00000367251 HMGXB3Q12766 1538 aa11.34□□□□□ -0.59
SYNE1-205ENST00000367251 PRXQ9BXM0 1461 aa11.33□□□□□ -0.6
SYNE1-205ENST00000367251 KIF3BO15066 747 aa11.33□□□□□ -0.6
SYNE1-205ENST00000367251 PLCB2Q00722 1185 aa11.33□□□□□ -0.6
SYNE1-205ENST00000367251 HDAC5Q9UQL6 1122 aa11.33□□□□□ -0.6
SYNE1-205ENST00000367251 NCOA2Q15596 1464 aa11.32□□□□□ -0.6
SYNE1-205ENST00000367251 PTPRGP23470 1445 aa11.32□□□□□ -0.6
SYNE1-205ENST00000367251 ST20-MTHFSA0A0A6YYL1 179 aa11.32□□□□□ -0.6
SYNE1-205ENST00000367251 ITPRIPQ8IWB1 547 aa11.32□□□□□ -0.6
SYNE1-205ENST00000367251 CCDC7Q96M83 1385 aa11.32□□□□□ -0.6
SYNE1-205ENST00000367251 E9PSI1 815 aa11.32□□□□□ -0.6
SYNE1-205ENST00000367251 RRP1P56182 461 aaKnown RBP11.31□□□□□ -0.6
SYNE1-205ENST00000367251 EHBP1L1Q8N3D4 1523 aa11.31□□□□□ -0.6
SYNE1-205ENST00000367251 MSH5O43196 834 aa11.31□□□□□ -0.6
SYNE1-205ENST00000367251 MSNP26038 577 aaKnown RBP11.31□□□□□ -0.6
SYNE1-205ENST00000367251 CNKSR2Q8WXI2 1034 aa11.31□□□□□ -0.6
SYNE1-205ENST00000367251 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.31□□□□□ -0.6
SYNE1-205ENST00000367251 ARAP1Q96P48 1450 aa11.31□□□□□ -0.6
SYNE1-205ENST00000367251 HMMRO75330 724 aa11.3□□□□□ -0.6
SYNE1-205ENST00000367251 AAMPQ13685 434 aa11.3□□□□□ -0.6
SYNE1-205ENST00000367251 PANK3Q9H999 370 aa11.3□□□□□ -0.6
SYNE1-205ENST00000367251 KLHL34Q8N239 644 aa11.3□□□□□ -0.6
SYNE1-205ENST00000367251 GOLGA6L4A6NEF3 574 aa11.29□□□□□ -0.6
SYNE1-205ENST00000367251 SMC4Q9NTJ3 1288 aa11.29□□□□□ -0.6
SYNE1-205ENST00000367251 CHAF1AQ13111 956 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-205ENST00000367251 CGNL1Q0VF96 1302 aa11.29□□□□□ -0.6
SYNE1-205ENST00000367251 PDE4CQ08493 712 aa11.29□□□□□ -0.6
SYNE1-205ENST00000367251 RAD54L2Q9Y4B4 1467 aa11.29□□□□□ -0.6
SYNE1-205ENST00000367251 PAK3O75914 559 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-205ENST00000367251 SYAP1Q96A49 352 aaPredicted RBP11.29□□□□□ -0.6
SYNE1-205ENST00000367251 FAM161AQ3B820 660 aa11.28□□□□□ -0.6
SYNE1-205ENST00000367251 AMER1Q5JTC6 1135 aaPredicted RBP11.28□□□□□ -0.6
SYNE1-205ENST00000367251 STK26Q9P289 416 aa11.28□□□□□ -0.6
SYNE1-205ENST00000367251 KIAA1211Q6ZU35 1233 aa11.28□□□□□ -0.6
SYNE1-205ENST00000367251 GNL2Q13823 731 aaKnown RBP11.27□□□□□ -0.6
SYNE1-205ENST00000367251 GTF2E1P29083 439 aaPredicted RBP11.27□□□□□ -0.6
SYNE1-205ENST00000367251 TIAM1Q13009 1591 aa11.27□□□□□ -0.61
SYNE1-205ENST00000367251 BRD4O60885 1362 aaPredicted RBP11.26□□□□□ -0.61
SYNE1-205ENST00000367251 WASHC2CQ9Y4E1 1318 aa11.26□□□□□ -0.61
SYNE1-205ENST00000367251 HTATSF1O43719 755 aaKnown RBP11.26□□□□□ -0.61
SYNE1-205ENST00000367251 SAFB2Q14151 953 aaKnown RBP eCLIP11.26□□□□□ -0.61
SYNE1-205ENST00000367251 STK31Q9BXU1 1019 aa11.26□□□□□ -0.61
SYNE1-205ENST00000367251 EVC2Q86UK5 1308 aa11.26□□□□□ -0.61
SYNE1-205ENST00000367251 GRIN2BQ13224 1484 aa11.26□□□□□ -0.61
SYNE1-205ENST00000367251 VGFO15240 615 aaPredicted RBP11.26□□□□□ -0.61
SYNE1-205ENST00000367251 PDE4AP27815 886 aa11.25□□□□□ -0.61
SYNE1-205ENST00000367251 GOLGA6L3A6NEY3 463 aa11.25□□□□□ -0.61
SYNE1-205ENST00000367251 ANKRD50Q9ULJ7 1429 aa11.25□□□□□ -0.61
SYNE1-205ENST00000367251 KIAA2012Q0VF49 1180 aa11.24□□□□□ -0.61
SYNE1-205ENST00000367251 KIF7Q2M1P5 1343 aa11.24□□□□□ -0.61
SYNE1-205ENST00000367251 CSPP1Q1MSJ5 1256 aa11.24□□□□□ -0.61
SYNE1-205ENST00000367251 HECW1Q76N89 1606 aa11.24□□□□□ -0.61
SYNE1-205ENST00000367251 WASHC2AQ641Q2 1341 aa11.24□□□□□ -0.61
SYNE1-205ENST00000367251 DDX11L8A8MPP1 907 aa11.24□□□□□ -0.61
SYNE1-205ENST00000367251 HFM1A2PYH4 1435 aa11.24□□□□□ -0.61
SYNE1-205ENST00000367251 CCDC146Q8IYE0 955 aa11.23□□□□□ -0.61
SYNE1-205ENST00000367251 GPATCH3Q96I76 525 aa11.23□□□□□ -0.61
SYNE1-205ENST00000367251 MAP3K1Q13233 1512 aa11.23□□□□□ -0.61
SYNE1-205ENST00000367251 ZKSCAN2Q63HK3 967 aa11.23□□□□□ -0.61
SYNE1-205ENST00000367251 MFAP1P55081 439 aaKnown RBP11.22□□□□□ -0.61
SYNE1-205ENST00000367251 MEX3CQ5U5Q3 659 aaKnown RBP11.22□□□□□ -0.61
SYNE1-205ENST00000367251 VPS53Q5VIR6 699 aa11.22□□□□□ -0.61
SYNE1-205ENST00000367251 CWC22Q9HCG8 908 aaKnown RBP11.22□□□□□ -0.61
SYNE1-205ENST00000367251 RTN4Q9NQC3 1192 aaKnown RBP11.22□□□□□ -0.61
SYNE1-205ENST00000367251 PRDM2Q13029 1718 aa11.21□□□□□ -0.61
SYNE1-205ENST00000367251 NOC3LQ8WTT2 800 aaKnown RBP11.21□□□□□ -0.61
SYNE1-205ENST00000367251 FRAT2O75474 233 aaPredicted RBP11.21□□□□□ -0.61
SYNE1-205ENST00000367251 SKOR2Q2VWA4 1001 aaPredicted RBP11.21□□□□□ -0.62
SYNE1-205ENST00000367251 EXOC6Q8TAG9 804 aa11.21□□□□□ -0.62
SYNE1-205ENST00000367251 WWC1Q8IX03 1113 aa11.2□□□□□ -0.62
SYNE1-205ENST00000367251 SPRYD3Q8NCJ5 442 aa11.2□□□□□ -0.62
SYNE1-205ENST00000367251 SUPT6HQ7KZ85 1726 aaKnown RBP11.2□□□□□ -0.62
SYNE1-205ENST00000367251 SLKQ9H2G2 1235 aaPredicted RBP11.2□□□□□ -0.62
SYNE1-205ENST00000367251 ST18O60284 1047 aa11.2□□□□□ -0.62
SYNE1-205ENST00000367251 AQRO60306 1485 aaKnown RBP eCLIP11.2□□□□□ -0.62
SYNE1-205ENST00000367251 TAF7LQ5H9L4 462 aa11.2□□□□□ -0.62
SYNE1-205ENST00000367251 GORABQ5T7V8 394 aa11.2□□□□□ -0.62
SYNE1-205ENST00000367251 PLEKHH2Q8IVE3 1493 aa11.2□□□□□ -0.62
SYNE1-205ENST00000367251 CRBNQ96SW2 442 aa11.2□□□□□ -0.62
SYNE1-205ENST00000367251 EID1Q9Y6B2 187 aa11.19□□□□□ -0.62
SYNE1-205ENST00000367251 PHF14O94880 888 aa11.19□□□□□ -0.62
SYNE1-205ENST00000367251 ANO8Q9HCE9 1232 aaPredicted RBP11.19□□□□□ -0.62
SYNE1-205ENST00000367251 SCAPERQ9BY12 1400 aa11.19□□□□□ -0.62
SYNE1-205ENST00000367251 DNMBPQ6XZF7 1577 aa11.19□□□□□ -0.62
SYNE1-205ENST00000367251 DDX19BQ9UMR2 479 aa11.19□□□□□ -0.62
SYNE1-205ENST00000367251 FBXO3Q9UK99 471 aa11.18□□□□□ -0.62
SYNE1-205ENST00000367251 TRAK1Q9UPV9 953 aa11.18□□□□□ -0.62
SYNE1-205ENST00000367251 KIAA1107Q9UPP5 1409 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms