RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 FGD6Q6ZV73 1430 aa16.05■□□□□ 0.16
PTCD1-201ENST00000292478 TSHZ2Q9NRE2 1034 aa16.04■□□□□ 0.16
PTCD1-201ENST00000292478 EVC2Q86UK5 1308 aa16.03■□□□□ 0.16
PTCD1-201ENST00000292478 KIF21BO75037 1637 aa16.03■□□□□ 0.16
PTCD1-201ENST00000292478 CGNL1Q0VF96 1302 aa16.03■□□□□ 0.16
PTCD1-201ENST00000292478 CSB-PGBD3P0DP91 1061 aa16.03■□□□□ 0.16
PTCD1-201ENST00000292478 E9PSI1 815 aa16.03■□□□□ 0.16
PTCD1-201ENST00000292478 CCDC146Q8IYE0 955 aa16.03■□□□□ 0.16
PTCD1-201ENST00000292478 SYAP1Q96A49 352 aaPredicted RBP16.03■□□□□ 0.16
PTCD1-201ENST00000292478 APBB1O00213 710 aa16.02■□□□□ 0.15
PTCD1-201ENST00000292478 CENPQQ7L2Z9 268 aaPredicted RBP16.02■□□□□ 0.15
PTCD1-201ENST00000292478 SPRYD3Q8NCJ5 442 aa16.02■□□□□ 0.15
PTCD1-201ENST00000292478 TRAK1Q9UPV9 953 aa16.02■□□□□ 0.15
PTCD1-201ENST00000292478 ERICH3Q5RHP9 1530 aa16.01■□□□□ 0.15
PTCD1-201ENST00000292478 NGDNQ8NEJ9 315 aaKnown RBP16.01■□□□□ 0.15
PTCD1-201ENST00000292478 LRRC9Q6ZRR7 1453 aa16■□□□□ 0.15
PTCD1-201ENST00000292478 CASKIN1Q8WXD9 1431 aa16■□□□□ 0.15
PTCD1-201ENST00000292478 FYCO1Q9BQS8 1478 aa15.99■□□□□ 0.15
PTCD1-201ENST00000292478 AMPHP49418 695 aa15.99■□□□□ 0.15
PTCD1-201ENST00000292478 MFAP1P55081 439 aaKnown RBP15.98■□□□□ 0.15
PTCD1-201ENST00000292478 GNL2Q13823 731 aaKnown RBP15.98■□□□□ 0.15
PTCD1-201ENST00000292478 MIA2Q96PC5 1412 aa15.97■□□□□ 0.15
PTCD1-201ENST00000292478 CSPP1Q1MSJ5 1256 aa15.97■□□□□ 0.15
PTCD1-201ENST00000292478 DRC7Q8IY82 874 aa15.96■□□□□ 0.15
PTCD1-201ENST00000292478 RAD54L2Q9Y4B4 1467 aa15.96■□□□□ 0.15
PTCD1-201ENST00000292478 RRP1P56182 461 aaKnown RBP15.96■□□□□ 0.15
PTCD1-201ENST00000292478 TAOK2Q9UL54 1235 aa15.96■□□□□ 0.15
PTCD1-201ENST00000292478 CLUAP1Q96AJ1 413 aa15.95■□□□□ 0.14
PTCD1-201ENST00000292478 SLKQ9H2G2 1235 aaPredicted RBP15.95■□□□□ 0.14
PTCD1-201ENST00000292478 ZKSCAN2Q63HK3 967 aa15.94■□□□□ 0.14
PTCD1-201ENST00000292478 COG3Q96JB2 828 aa15.94■□□□□ 0.14
PTCD1-201ENST00000292478 RTN4Q9NQC3 1192 aaKnown RBP15.94■□□□□ 0.14
PTCD1-201ENST00000292478 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.94■□□□□ 0.14
PTCD1-201ENST00000292478 NUTM2DQ5VT03 806 aaPredicted RBP15.94■□□□□ 0.14
PTCD1-201ENST00000292478 TRIM6-TRIM34B2RNG4 842 aa15.93■□□□□ 0.14
PTCD1-201ENST00000292478 KIAA2012Q0VF49 1180 aa15.93■□□□□ 0.14
PTCD1-201ENST00000292478 FAM161AQ3B820 660 aa15.93■□□□□ 0.14
PTCD1-201ENST00000292478 ST18O60284 1047 aa15.92■□□□□ 0.14
PTCD1-201ENST00000292478 USP35Q9P2H5 1018 aa15.92■□□□□ 0.14
PTCD1-201ENST00000292478 GORABQ5T7V8 394 aa15.92■□□□□ 0.14
PTCD1-201ENST00000292478 SLC4A10Q6U841 1118 aa15.92■□□□□ 0.14
PTCD1-201ENST00000292478 CCDC7Q96M83 1385 aa15.92■□□□□ 0.14
PTCD1-201ENST00000292478 GOLGA6L3A6NEY3 463 aa15.91■□□□□ 0.14
PTCD1-201ENST00000292478 NCOA2Q15596 1464 aa15.91■□□□□ 0.14
PTCD1-201ENST00000292478 CCDC34Q96HJ3 373 aa15.91■□□□□ 0.14
PTCD1-201ENST00000292478 CNTLNQ9NXG0 1405 aa15.89■□□□□ 0.13
PTCD1-201ENST00000292478 TPM4P67936 248 aa15.89■□□□□ 0.13
PTCD1-201ENST00000292478 EFCAB5A4FU69 1503 aa15.89■□□□□ 0.13
PTCD1-201ENST00000292478 ANKRD50Q9ULJ7 1429 aa15.89■□□□□ 0.13
PTCD1-201ENST00000292478 TAF7LQ5H9L4 462 aa15.89■□□□□ 0.13
PTCD1-201ENST00000292478 CHMP4CQ96CF2 233 aa15.89■□□□□ 0.13
PTCD1-201ENST00000292478 RRBP1Q9P2E9 1410 aaKnown RBP15.89■□□□□ 0.13
PTCD1-201ENST00000292478 GRIN2BQ13224 1484 aa15.88■□□□□ 0.13
PTCD1-201ENST00000292478 AAMPQ13685 434 aa15.88■□□□□ 0.13
PTCD1-201ENST00000292478 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.88■□□□□ 0.13
PTCD1-201ENST00000292478 KIF3AQ9Y496 699 aa15.88■□□□□ 0.13
PTCD1-201ENST00000292478 PDE4AP27815 886 aa15.88■□□□□ 0.13
PTCD1-201ENST00000292478 RRP7AQ9Y3A4 280 aaKnown RBP15.88■□□□□ 0.13
PTCD1-201ENST00000292478 DDX11L8A8MPP1 907 aa15.87■□□□□ 0.13
PTCD1-201ENST00000292478 CFTRP13569 1480 aa15.87■□□□□ 0.13
PTCD1-201ENST00000292478 OSCARQ8IYS5 282 aa15.86■□□□□ 0.13
PTCD1-201ENST00000292478 DDX19BQ9UMR2 479 aa15.86■□□□□ 0.13
PTCD1-201ENST00000292478 PHF14O94880 888 aa15.86■□□□□ 0.13
PTCD1-201ENST00000292478 DIAPH1O60610 1272 aaKnown RBP15.86■□□□□ 0.13
PTCD1-201ENST00000292478 ZNF330Q9Y3S2 320 aaPredicted RBP15.86■□□□□ 0.13
PTCD1-201ENST00000292478 EXOC6Q8TAG9 804 aa15.85■□□□□ 0.13
PTCD1-201ENST00000292478 CHMP3Q9Y3E7 222 aa15.85■□□□□ 0.13
PTCD1-201ENST00000292478 KIF7Q2M1P5 1343 aa15.85■□□□□ 0.13
PTCD1-201ENST00000292478 TULP1O00294 542 aaPredicted RBP15.85■□□□□ 0.13
PTCD1-201ENST00000292478 CRBNQ96SW2 442 aa15.85■□□□□ 0.13
PTCD1-201ENST00000292478 GZF1Q9H116 711 aaPredicted RBP15.84■□□□□ 0.13
PTCD1-201ENST00000292478 APAF1O14727 1248 aa15.84■□□□□ 0.13
PTCD1-201ENST00000292478 HSP90B1P14625 803 aaKnown RBP15.84■□□□□ 0.13
PTCD1-201ENST00000292478 RUNDC1Q96C34 613 aa15.84■□□□□ 0.13
PTCD1-201ENST00000292478 API5Q9BZZ5 524 aaKnown RBP15.84■□□□□ 0.13
PTCD1-201ENST00000292478 ROCK1Q13464 1354 aa15.84■□□□□ 0.13
PTCD1-201ENST00000292478 PRDM2Q13029 1718 aa15.84■□□□□ 0.13
PTCD1-201ENST00000292478 KIF16BQ96L93 1317 aa15.83■□□□□ 0.12
PTCD1-201ENST00000292478 TMX4Q9H1E5 349 aaPredicted RBP15.83■□□□□ 0.12
PTCD1-201ENST00000292478 BRD4O60885 1362 aaPredicted RBP15.83■□□□□ 0.12
PTCD1-201ENST00000292478 C1orf141Q5JVX7 400 aa15.83■□□□□ 0.12
PTCD1-201ENST00000292478 MINK1Q8N4C8 1332 aaPredicted RBP15.82■□□□□ 0.12
PTCD1-201ENST00000292478 LTV1Q96GA3 475 aaPredicted RBP15.82■□□□□ 0.12
PTCD1-201ENST00000292478 SKOR2Q2VWA4 1001 aaPredicted RBP15.82■□□□□ 0.12
PTCD1-201ENST00000292478 ANKRD45Q5TZF3 282 aa15.82■□□□□ 0.12
PTCD1-201ENST00000292478 EHBP1L1Q8N3D4 1523 aa15.81■□□□□ 0.12
PTCD1-201ENST00000292478 AQRO60306 1485 aaKnown RBP eCLIP15.81■□□□□ 0.124e-7■■■■■ 32.1
PTCD1-201ENST00000292478 ZNF644Q9H582 1327 aaPredicted RBP15.81■□□□□ 0.12
PTCD1-201ENST00000292478 FANCIQ9NVI1 1328 aa15.81■□□□□ 0.12
PTCD1-201ENST00000292478 SYNJ1O43426 1573 aa15.8■□□□□ 0.12
PTCD1-201ENST00000292478 SYNJ2O15056 1496 aa15.8■□□□□ 0.12
PTCD1-201ENST00000292478 ARAP1Q96P48 1450 aa15.8■□□□□ 0.12
PTCD1-201ENST00000292478 ISY1Q9ULR0 285 aaKnown RBP15.8■□□□□ 0.12
PTCD1-201ENST00000292478 HFM1A2PYH4 1435 aa15.8■□□□□ 0.12
PTCD1-201ENST00000292478 PLIN1O60240 522 aa15.8■□□□□ 0.12
PTCD1-201ENST00000292478 DZIP1LQ8IYY4 767 aaKnown RBP15.8■□□□□ 0.12
PTCD1-201ENST00000292478 ATP6V1DQ9Y5K8 247 aa15.8■□□□□ 0.12
PTCD1-201ENST00000292478 COG6Q9Y2V7 657 aa15.79■□□□□ 0.12
PTCD1-201ENST00000292478 TOP2BQ02880 1626 aa15.79■□□□□ 0.12
PTCD1-201ENST00000292478 PRXQ9BXM0 1461 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms